LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0568	ATGGCAGAAAACTCCCTATCTCTGGGATCGAGTTTAACGATTGGAGAAACACTTTGTGCGGTATTCATTCCACTCATTGGAATAGCTGAAGCTTTATTTTGCAGCTTAGCGAGTTGCTTCGATTTCCGTAGTTCAGACCAGAAGAAGAAAGAGAAAGAGAAGAAATTGTTTTCTTCCTTTCAAGAGATTCTCGCACTCGCTAACGACTCTCCTTTTAATGTGAATGAAATTGAGGCGTTGCATGAGTTATACAAGAAGTTGAGTTGTTCAATCATTGACGACGGTCTCATCCACAAAGAAGAGCTTACATTGGCACTATTGAAGACCTCAGTTGGCAAGAATCTTTTCCTTGATAGGGTCTTTGATCTCTTTGATGAAAAAAAGAATGGCGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTCATACACCTTTAGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAAACTGGATATATTGAACGAGAAGAAGTTCGACAAATGGTGGTTGCTATTTTGTCAGAATGTGGCATGGATGTGGAAAATGAAGTCCTTGAATCCATTATTGATAAGACATTTCAAGATGCCGATGCTGACAAGGATGATAAGATCAGTAAAGAAGAGTGGAAGGAATTTGTCATTCGGAACCCATCACTCTTGAGGCACCTGACTCTTCCTAATCTGAAGGACGTAACCACAGTATTTACCAGTTTCATTTTCAACACTGGAGTTGATGATTTCCACTAG	774	0.3902	MAENSLSLGSSLTIGETLCAVFIPLIGIAEALFCSLASCFDFRSSDQKKKEKEKKLFSSFQEILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTSVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPHTPLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAILSECGMDVENEVLESIIDKTFQDADADKDDKISKEEWKEFVIRNPSLLRHLTLPNLKDVTTVFTSFIFNTGVDDFH*	258

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0568	257	SMART	efh_1	153	181	IPR002048	GO:0005509
	Mal5g0568	257	SMART	efh_1	197	225	IPR002048	GO:0005509
	Mal5g0568	257	SMART	efh_1	116	144	IPR002048	GO:0005509
	Mal5g0568	257	ProSiteProfiles	EF-hand calcium-binding domain profile.	193	228	IPR002048	GO:0005509
	Mal5g0568	257	ProSiteProfiles	EF-hand calcium-binding domain profile.	149	184	IPR002048	GO:0005509
	Mal5g0568	257	ProSiteProfiles	EF-hand calcium-binding domain profile.	112	147	IPR002048	GO:0005509
	Mal5g0568	257	CDD	EFh	117	178	IPR002048	GO:0005509
	Mal5g0568	257	Gene3D	-	64	256	-	-
	Mal5g0568	257	SUPERFAMILY	EF-hand	67	244	IPR011992	-
	Mal5g0568	257	Pfam	EF hand	117	142	IPR002048	GO:0005509
	Mal5g0568	257	ProSitePatterns	EF-hand calcium-binding domain.	206	218	IPR018247	-
	Mal5g0568	257	PRINTS	Recoverin family signature	120	141	-	-
	Mal5g0568	257	PRINTS	Recoverin family signature	213	233	-	-
	Mal5g0568	257	PRINTS	Recoverin family signature	167	185	-	-
	Mal5g0568	257	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	5	255	-	-
	Mal5g0568	257	PANTHER	CALCINEURIN B	5	255	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Mal5g0568	257	Pfam	EF-hand domain pair	152	221	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0568	Mal-Chr5	8811502	8815624	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0568	32	255	EF-hand Containing Proteins	AT5G55990	54.018	1.43e-81	243

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0568	K06268		-	gmx:100306023	375.555