Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0467 ATGGGTAGTTCTGAAGGGTTAGGAACATCGTCAAAGCCTGCGAATTCTTCTTCGCAGGCGGTACCGGTGAAACAATATGGTGTCACAAAGCCTATTTCAATGGCTGGTCCAACAAGTGCTGATATGAAAAGGACTCAACAGTTGGAGAAGTTTCTCGCTGATTTGGGGCTATATGAGAGCAAGGAGGAAGCTGACAAGAGGGAAGAGGTCCTTCATAAACTTGGGCAGATAGTAAAAAGCTGGGTGAAGCAGCTTACTCGTCTGAAAGGCTACACTGATCAAATGGTGGAAGATGCAAATGCCGTCATACTTACATTCGGTTCTTATCGTCTTGGCGTTCATGGACCTGGTGCCGACCTAGATACACTGTGTATTGGGCCATCCTATGTGAACCGGGAGGAGGATTTTTTCTACACATTGCATGATATCCTGGCTAGCGTGGATGAAGTTACTGAACTGCAACCAGTTCCGGACGCTCATGTCCCAGTTATGAAGTTCAAGTTTGATGGAATATCGATTGACCTTCTTTATGCAAGTATTTCTTGCTTGATTGTACCTGAAGAATTGGATATATCTGATGTCTCTGTTCTTCACAATGTTGATGAGCCTACTGTTCGAAGTTTGAATGGTTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGTACTTTCGAACAACACTCCAGTGCTTGAAGTTTTGGGCCAAAAGACGAGGTGTTTATTCCAATGTGACAGGTTTTCTCGGTGGTGTTAACTGGGCACTTCTTGTAGCTCGAGTATGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTCGTCTCTCGATTCTTTAGGGTATATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGTTCGATAGAGGAGAACGAGCTTGGGTTTTCTGTGTGGCATCCTCTTAGAAATCCTCGTGATCGATCCCATCTTATGCCAATCATAACTCCCGCCTATCCGTGCATGAATTCAAGCTATAATGTTTCTACAAGCACGCTTCGAGTTATGATGGAGCAGTTCCAATATGGCAACAAAATCTGTGAGGATATTGAACTAAATAAAGTCGGCTGGAGTGCTCTGTTTGAACCATATATTTTCTTTGAAGGCTACAAAAACTTTTTGCAAATTGACATAGTTGCTGCTGATGTTGATGACTTGCGTGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGGCAGCTGACTTTGATGATTGAGCGTGATACTATTGGGAAGTTGCAGTGCCATCCTTATCCTCAGGAGTATATTGATAATTCAAGGAAATGTGCACATAGTGCTTTCTTCATGGGCTTGCAGAGGAAACAGGGGGAGGTTGTTCAAGAAGGCCAGCAGTTTGATATACGTGGTACTGTTGAAGCATTTCGGCATTCTATTAATATGTACATGTTCTGGAAACCTGGGATGGATATTCATGTTTCACACATCCGTAGAAGGCAAATCCCATGCTATGCATTTCCTGATGGTTTTAAGCGATCTCGACCATCAAGGTCAACAGCACCACTGGAGAATCGTCCAAAATCATTTAAGAGGAAGTACGATGACAGTGGGGTGAAGCAGGATGTTGTACTGAAAAAACATTCTGCCAGTCCTCCTGTTGAGAGCTTGACAAGTGGCAACTCGTGCCTCGGTGCTGGTGACATGTCTGTTGATGCTGCTGTATCTGATTGTCTAGAGTTGGATAGAAGAATGTCTCCAGAAGCTGCAACTGAATGTGGATCAAATTCTAGTGTGGTTACATCTGTTTCAAGCGAAGATGGCTCTCCTGTATATGTTGGATCTGTATCAGCGGCAGGGTACGTCGAGGATAGCACCAGGGCTGTTGAGGCGATGACCAACGGTGGATTCGAGGGCACCACTTACAGGGCAGATTCTGTGAAACTTGGAATCAGTACACTGGCCAATGCAAATAATGAAGTATTACAAGACGCGCTACAGACACAGTTGGAGGAGAGTGAGTCTAACATCGACAGCGTGAGAAATCCAGCAGTTGAATTCGTTGGCGATTTTTGTTTGTGTGGTGTCGATTCTAAACTGACTTCATTAGGATTTGTTAGGATTCATGCTGAACTTAGTGGGCATACATTAAAAGGCTCATGA 2139 0.4423 MGSSEGLGTSSKPANSSSQAVPVKQYGVTKPISMAGPTSADMKRTQQLEKFLADLGLYESKEEADKREEVLHKLGQIVKSWVKQLTRLKGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCIGPSYVNREEDFFYTLHDILASVDEVTELQPVPDAHVPVMKFKFDGISIDLLYASISCLIVPEELDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEYFRTTLQCLKFWAKRRGVYSNVTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFSVWHPLRNPRDRSHLMPIITPAYPCMNSSYNVSTSTLRVMMEQFQYGNKICEDIELNKVGWSALFEPYIFFEGYKNFLQIDIVAADVDDLRAWKGWVESRLRQLTLMIERDTIGKLQCHPYPQEYIDNSRKCAHSAFFMGLQRKQGEVVQEGQQFDIRGTVEAFRHSINMYMFWKPGMDIHVSHIRRRQIPCYAFPDGFKRSRPSRSTAPLENRPKSFKRKYDDSGVKQDVVLKKHSASPPVESLTSGNSCLGAGDMSVDAAVSDCLELDRRMSPEAATECGSNSSVVTSVSSEDGSPVYVGSVSAAGYVEDSTRAVEAMTNGGFEGTTYRADSVKLGISTLANANNEVLQDALQTQLEESESNIDSVRNPAVEFVGDFCLCGVDSKLTSLGFVRIHAELSGHTLKGS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0467 712 CDD NT_PAP_TUTase 66 221 - -
Mal5g0467 712 Gene3D Poly(A) polymerase predicted RNA binding domain 374 489 - -
Mal5g0467 712 Gene3D - 27 369 - -
Mal5g0467 712 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 374 499 IPR011068 GO:0003723|GO:0016779|GO:0031123
Mal5g0467 712 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g0467 712 Pfam Poly(A) polymerase central domain 27 371 IPR007012 GO:0004652|GO:0043631
Mal5g0467 712 Pfam Nucleotidyltransferase domain 100 175 IPR002934 GO:0016779
Mal5g0467 712 Pfam Poly(A) polymerase predicted RNA binding domain 374 433 IPR007010 GO:0003723|GO:0043631
Mal5g0467 712 PANTHER POLY A POLYMERASE 16 581 - -
Mal5g0467 712 Gene3D Beta Polymerase, domain 2 59 215 IPR043519 -
Mal5g0467 712 SUPERFAMILY PAP/OAS1 substrate-binding domain 222 371 - -
Mal5g0467 712 SUPERFAMILY Nucleotidyltransferase 26 220 IPR043519 -
Mal5g0467 712 PANTHER NUCLEAR POLY(A) POLYMERASE 4 16 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0467 Mal-Chr5 6881770 6885925 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0467 K14376 - gmx:100783237 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0467 5 6881770 6885925 Mal5g0467 5 6881770 6885925 ECH