Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0422 ATGGATGATGCAATATTTGATGAAGAGTGTGATTACCTGTTCAAGGCAGTACTGATTGGTGACTCTGGAGTGGGGAAATCAAATCTTCTTTCAAGGTTTGCAAAAGATGAATTCAGGTTGGATTCAAAACCAACTATAGGAGTTGAATTTGCTTACAGAAACATCAAAGTGAGAGACAAACTCATCAAAGCTCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCTATCACAAGTTCGTACTATAGAGGAGCATTGGGAGCAATGCTAGTGTATGACATAACGAGGCGATCAAGTTATGAGAGTGCAGGCAGATGGTTAGTAGAGCTAAGGGAGTTTGGTGGGGAAGAGATGGTAGTTATTCTAGTTGGAAACAAATGTGATCTTTCTGAAGAATCAAGACAAGTTGAGGAAGAAGAAGCAAAGGAATTTGCAGAGACAGAAGGGTTGTGTTTTATGGAAACCTCTGCTTTCAAGAATCTCAACGTTGACCAAGTCTTCTTACAAATGATCACAAAGATATTTGACATCACAAGCCAGAGAAGTTTGGAAGCTAAAATGGATATTGAGAAACCAATTAATCTTTACATTGGGAAAGAGATTCATATAGCTGATGATGATCAAGTCACCGCAACTAAACAGGCTTCATGTTGTTCATGA 663 0.3922 MDDAIFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRSSYESAGRWLVELREFGGEEMVVILVGNKCDLSEESRQVEEEEAKEFAETEGLCFMETSAFKNLNVDQVFLQMITKIFDITSQRSLEAKMDIEKPINLYIGKEIHIADDDQVTATKQASCCS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0422 220 SMART rab_sub_5 14 178 - -
Mal5g0422 220 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Mal5g0422 220 TIGRFAM small_GTP: small GTP-binding protein domain 13 168 IPR005225 GO:0005525
Mal5g0422 220 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 191 IPR027417 -
Mal5g0422 220 PRINTS Transforming protein P21 ras signature 37 53 - -
Mal5g0422 220 PRINTS Transforming protein P21 ras signature 55 77 - -
Mal5g0422 220 PRINTS Transforming protein P21 ras signature 14 35 - -
Mal5g0422 220 PRINTS Transforming protein P21 ras signature 153 175 - -
Mal5g0422 220 PRINTS Transforming protein P21 ras signature 117 130 - -
Mal5g0422 220 ProSiteProfiles small GTPase Rab1 family profile. 9 219 - -
Mal5g0422 220 SMART ras_sub_4 11 178 - -
Mal5g0422 220 Gene3D - 6 219 IPR027417 -
Mal5g0422 220 PANTHER RAS-RELATED PROTEIN RABA6B 1 219 - -
Mal5g0422 220 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Mal5g0422 220 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Mal5g0422 220 PANTHER DRAB11-RELATED 1 219 - -
Mal5g0422 220 ProSiteProfiles small GTPase Ras family profile. 8 220 IPR001806 GO:0003924|GO:0005525
Mal5g0422 220 SMART ran_sub_2 19 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0422 Mal-Chr5 6264838 6267177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0422 15 181 EF-hand Containing Proteins AT5G27540 29.189 1.06e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0422 - K07976 mtr:MTR_8g107070 357.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0422 5 6264838 6267177 Mal5g0422 5 6264838 6267177 ECH