Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0392 ATGCCGTTTCCGATGATGCGAATTCGAATGCGGATGCCCTCCGTAGTACCACCGCACTCAGCCGGCATCTTCAGAATCGCCACTCGTCATTTCCTCGCCGCCGCCACTTCCCTACAACCAACAACCACAAACCTCCGCATTTGTCTTTCATCCTCCTCACCCGCCGCGCTAAACCACAGACACTGTGCGGCTCTCAGACACAGGACCTTCGCTCTTCCGCCTTTTCACCAACAAAGCTCCACTTACGGCCGTTTTGCCTTTAATGACGCTTCCAGCGATGATTCCGACCTCGAATTCGCTTCTTCTCACTCTCATCCTCGCCCTCAACAACAACAACAACAACAATTGGGGGATTCGACTCTTGAAAACATTGATTCTTGGAGATGGAAACTCACCATGCTTCTTCGCAATAAAGACCAGCAAGAAGTTGTGTCCAATGAGAAAAAGGACCGTCGTGATTTTCTTCAACTTGAAACTTTAGCTACCAGGATGGGTTTATACAGTCGACAATATGCAAGAGTTGTTGTCTTTAGCAAGGCACCTTTGCCAAATTATCGCCCTGATCTTGATGATAAGCGTCCACTGAGAGAGGTAACCTTACCATTTGGTGTTCATAGAGAAGTAGACACTCATCTCCTTGCTCATCTTTCACATAAGGCTACAAAAAGAGTAGGCTCTTTCAATGATTCCTTGCATAGATCAAGGGATGATGGAAGCATTCCTGCGGATGAAGGGATTTATGGGCATCCGGAGCCCATGAGCCATAATAGTGTTGCCAAAGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCATCATCAACAACAAGATTGGCAGGAATCTCTCGAAGGGCAAAAGATGCTTGAATTTCGCCGAACTCTTCCTGCATTCAAAGAGAAAGATGCATTTTTGAAAGTCGTTTCAGAGAATCAGGTCATTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCACGTGGAGCTCTATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATATCTGTTTCTGAGAGAGTTGCAGCAGAACGTGGGGAAAAATTGGGAGAATCTGTTGGTTATAAAGTTCGGTTGGAGGGTATGAGAGGGAGGGATACTCGTCTTCTTTTTTGCACCACAGGTGTGTTACTGCGGAGACTACTTGTGGATAGAAGTTTAAAAGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGATCTTCTCCCTCGTCGTCCTGATTTGAGATTAATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCTTCGTATTTTGATGGTGCCCCAACTATGCATATCCCTGGGTTTACCTTTCCAGTTCGAGCACAATTTCTTGAGGATATTCTGGAAAGGACTGGATATCGTTTGACTCCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAGCTCAGTCTTTCAAAAAAAGAAAGAGCCAGATTGCTTCTTCTGTTGAGGATGCATTAGAGGTTGCAGACTTTAAGGGGTATAGCCTACGCACTAAGGAGTCAATGTCCTGCTGGAACCCTGACTCAATTGGTTTCAACCTTATTGAACACGTGCTTTGTCACATTGTTAAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAACTCTTTGAAGGATAAACTCCATGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTACTTCTTGCGTGCCATGGCTCTATGTCCAGCTCAGAGCAGAAATTAATATTTGAAAATCCTGAAGGAGGGGTGAGGAAGATTGTTCTGGCTACTAATATGGCTGAGACTAGTATTACCATTAATGACGTTGTATTTGTGGTTGATTGTGGAAAAGCAAAGGAGACATCATATGATGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAAGCTGCTGCTAGACAGAGAAAAGGAAGGGCAGGTCGTGTTCAATCTGGCGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCTGAGCTTTTAAGAACACCTTTACAGTCCTTATGTCTACAAATTAAAAGTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGTGCTCTCCAGCCACCAGAGCCTCTATCGGTTCAAAATGCTGTTGATTATTTGAAAATTATCGGTGCTTTGGATGAGAATGAAAATTTGACAGTTCTAGGGCGCAAGTTGTCAATGCTTCCGGTAGAGCCTAAGCTTGGCAAGATGCTCATCTTGGGAGCTATTTTCAACTGTTTGGATCCCATATTGACTGTTGTTGCTGGGCTTAGTGTAAGAGATCCATTTGTTGTGCCGGCTGACAAGAAGGATCTTGCAGAGTCGGCCAAGGCCCAGCTTGCTGCTCGTGCATACAGTGATCATCTTGCACTTGTTCGTGCTTATGATGGTTGGAAAGAGGCTGAAGCACAGCGAGCTGGTTATGAGTTCTGTTGGCGTAATTTTCTTTCTTCTCAAACTCTTAGAGCTATTGACTCTCTTCGAAAGCAATTCTTTCACTTGCTCAAAGATATTGGTCTGGTTGGCAACAATTCTGAAACCAACAATAAATGGAGTAATGAGGAGCATCTGCTCCGAGCAGTTATCTGTGCGGGTTTGTTTCCCGGAATATCCTCTGTTGTGAACAAGGAAAAGTCAATATCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGTATGCTAACTCTGTAAATGGAAGTGTAGCCAAAATTCCATACCCATGGATAGTGTTTAATGAAAAGATTAAAGTGAACACAGTATTCCTTAGGGATTCAACTGGCATATCCGATTCCATGCTGCTCTTATTTGGTGGGAACATATCCAAAGGTGGACTGGATGGTAACCTAAAAATGTTGGGAGGGTATCTGGAATTTTTCATGAAACCAGAATTAGCCAAGACATACTCAACTTTAAAGAGGGAACTGGAGGAATTGATACAGAAAAAACTTCTGGATCCTATGTTCGATATACACTCGCATAATGAGCTTCTTTCAGCTGTTAGATTGTTGGTATCAGAGGACCACTGCGACGGAAGATTTGTCTTTGCTCACCAGATCCTACCACAGTTGAAGAAGGAAACGAAATCCAAAAGTGGTGATGGAGTTGGGAGTGATAATTCTAAAAATCAGCTTCAAACATTCCTCAACAGGGCTGGACATCAGTCACCAACTTACAAAACGCAGCAGCTGAGAAAGAACCAATTCCGTTCTACTGTCATATTCAATGGCTTGGATTTTGTTGGCCAGCCATGCAACAGCAAGAAACTAGCAGAAAAATCTGCTGCTGCTGAGGCTATTCTATGGTTAAAAGGGGACAATACCCATTCATCTGGTGATATTGATCATGCATCTGTGCTTTTGAAGAAAAGCAACAAGAAAAGTAAAAAAAAATCGTTTAGTGACGCTAAATGGAGTTGA 3582 0.4241 MPFPMMRIRMRMPSVVPPHSAGIFRIATRHFLAAATSLQPTTTNLRICLSSSSPAALNHRHCAALRHRTFALPPFHQQSSTYGRFAFNDASSDDSDLEFASSHSHPRPQQQQQQQLGDSTLENIDSWRWKLTMLLRNKDQQEVVSNEKKDRRDFLQLETLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPLREVTLPFGVHREVDTHLLAHLSHKATKRVGSFNDSLHRSRDDGSIPADEGIYGHPEPMSHNSVAKEKILQRRSLQLHHQQQDWQESLEGQKMLEFRRTLPAFKEKDAFLKVVSENQVIVVSGETGCGKTTQLPQYILESEIEAARGALCNIICTQPRRISAISVSERVAAERGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHERGMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAQFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQAQSFKKRKSQIASSVEDALEVADFKGYSLRTKESMSCWNPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDKLHAHPLLGDQSRVLLLACHGSMSSSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRKGRAGRVQSGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSSALQPPEPLSVQNAVDYLKIIGALDENENLTVLGRKLSMLPVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVVPADKKDLAESAKAQLAARAYSDHLALVRAYDGWKEAEAQRAGYEFCWRNFLSSQTLRAIDSLRKQFFHLLKDIGLVGNNSETNNKWSNEEHLLRAVICAGLFPGISSVVNKEKSISLKTMEDGQVLLYANSVNGSVAKIPYPWIVFNEKIKVNTVFLRDSTGISDSMLLLFGGNISKGGLDGNLKMLGGYLEFFMKPELAKTYSTLKRELEELIQKKLLDPMFDIHSHNELLSAVRLLVSEDHCDGRFVFAHQILPQLKKETKSKSGDGVGSDNSKNQLQTFLNRAGHQSPTYKTQQLRKNQFRSTVIFNGLDFVGQPCNSKKLAEKSAAAEAILWLKGDNTHSSGDIDHASVLLKKSNKKSKKKSFSDAKWS* 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0392 1193 Pfam Helicase conserved C-terminal domain 562 693 IPR001650 -
Mal5g0392 1193 Gene3D - 1077 1162 - -
Mal5g0392 1193 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1094 1159 IPR014720 -
Mal5g0392 1193 Gene3D - 554 712 IPR027417 -
Mal5g0392 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 560 734 IPR001650 -
Mal5g0392 1193 CDD SF2_C_RHA 548 702 - -
Mal5g0392 1193 MobiDBLite consensus disorder prediction 102 118 - -
Mal5g0392 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 892 IPR027417 -
Mal5g0392 1193 Pfam DEAD/DEAH box helicase 305 455 IPR011545 GO:0003676|GO:0005524
Mal5g0392 1193 SMART helicmild6 588 694 IPR001650 -
Mal5g0392 1193 Coils Coil 1016 1036 - -
Mal5g0392 1193 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 102 1097 - -
Mal5g0392 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 304 471 IPR014001 -
Mal5g0392 1193 SMART ha2_5 756 847 IPR007502 GO:0004386
Mal5g0392 1193 SMART DRBM_3 1095 1158 IPR014720 -
Mal5g0392 1193 Pfam Double-stranded RNA binding motif 1095 1157 IPR014720 -
Mal5g0392 1193 CDD DEXHc_RHA-like 310 470 - -
Mal5g0392 1193 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 913 995 IPR011709 -
Mal5g0392 1193 Gene3D - 736 845 - -
Mal5g0392 1193 MobiDBLite consensus disorder prediction 93 118 - -
Mal5g0392 1193 MobiDBLite consensus disorder prediction 1160 1193 - -
Mal5g0392 1193 Pfam Helicase associated domain (HA2) 757 834 IPR007502 GO:0004386
Mal5g0392 1193 SUPERFAMILY dsRNA-binding domain-like 1094 1168 - -
Mal5g0392 1193 SMART ultradead3 292 488 IPR014001 -
Mal5g0392 1193 Gene3D - 249 472 IPR027417 -
Mal5g0392 1193 PANTHER ATP-DEPENDENT RNA HELICASE 102 1097 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0392 Mal-Chr5 5979649 5997561 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0392 K14442 - gmx:100791006 1863.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0392 5 5979649 5997561 Mal5g0392 5 5979649 5997561 ECH