Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0250 ATGCAAGGGTTCATTGCTTTTGTTTTGATTCTTGGTTTTATTTCGCCTTGTCTATGTACCAGGTTGAATGTTGGAACAAAAAATGCAATTTATAATGTGATTCAATATGGTGCGCGTGGTGATGGCAAAACTGATGATTCACAAGCATTTTTTAGTGCATTTAGCAGTGCGTGTAAAGTAGCAGGGATGTCAACACTAGTAATACCAGCTGGAAAAACATTCATGGTGTCAAAAGTAAATTTTAGCGGTCCTTGCAATGCCAAAATTCTCATTCAGCTTGAAGGGCAAATAGTTGCACCTTCTAAAGCAGCATCAAAATCTACGGTATATTGGATTAGCGTCGAATATCTAAACGGACTCACAATTGATGGCAATAACAAAGGAGGTATCCATGGAGATGGTTCTACTTGGTGGCATTGCCCAACTTGTGATCGACCTATGATGTTGTTTTTTCATTCCTGCAATGGTCTCAATGTTAGAAACTTGAGGATTCTGAATAGCCCAAAATCTCATGTATCTGTTATTATGTGCAATCATGCAACATTTTCTCATATATCCATTAATTCTCCTGCTACTAGCCCCAACACCGATGGGTTTGACATCTCTCGTTCTAGTAATATCTTGATAGAAGATTCCAACATAAAATCGGGTGATGATTGTATTGCTGTCAATGGTGGCTCCTCTTTTATTAATGCTACTCGGGTTACTTGTGGACCGGGCCATGGAATAAGTATTGGTAGCCTTGGTAGAAATAGATCACATGATGAAGTTTCCAATGTTCATATACGTAACTGTACCTTCATTGGGACTACAAATGGAGCAAGAATCAAGACCGTTCCGGGTGGATCAGGATATGCAAGACAGATTACATTTGAGCAAATCATCCTTGGTAATGTTAAGAACCCAATAATTATAGATCAGGGATACACCGTTAGTCCACGGGATACAGCTGTGATGGTGAGTTCTGTGACATATCGAGGATTTACTGGAACTTCTAGAAGCGACATAGCTATTAATTTAAATTGTAGTTCCCTTGGTTGTTTCAACATTCAATTGGATCAAAATAACATTGTATCTGCTCAACCAGGAAAGAAGACTTCAGTTTTTTGTAGAAATGCTCATGGAACAGTTAGAAATACCATTCCAAATGTCTCTTGCCTGTCTAATTAG 1170 0.3855 MQGFIAFVLILGFISPCLCTRLNVGTKNAIYNVIQYGARGDGKTDDSQAFFSAFSSACKVAGMSTLVIPAGKTFMVSKVNFSGPCNAKILIQLEGQIVAPSKAASKSTVYWISVEYLNGLTIDGNNKGGIHGDGSTWWHCPTCDRPMMLFFHSCNGLNVRNLRILNSPKSHVSVIMCNHATFSHISINSPATSPNTDGFDISRSSNILIEDSNIKSGDDCIAVNGGSSFINATRVTCGPGHGISIGSLGRNRSHDEVSNVHIRNCTFIGTTNGARIKTVPGGSGYARQITFEQIILGNVKNPIIIDQGYTVSPRDTAVMVSSVTYRGFTGTSRSDIAINLNCSSLGCFNIQLDQNNIVSAQPGKKTSVFCRNAHGTVRNTIPNVSCLSN* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0250 389 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
Mal5g0250 389 SMART pbh1 204 225 IPR006626 -
Mal5g0250 389 SMART pbh1 177 203 IPR006626 -
Mal5g0250 389 SMART pbh1 257 278 IPR006626 -
Mal5g0250 389 ProSitePatterns Polygalacturonase active site. 234 247 IPR000743 GO:0004650|GO:0005975
Mal5g0250 389 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 387 - -
Mal5g0250 389 PANTHER - 1 387 - -
Mal5g0250 389 SUPERFAMILY Pectin lyase-like 24 387 IPR011050 -
Mal5g0250 389 Gene3D - 18 386 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0250 Mal-Chr5 4217989 4221977 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0250 30 375 Glycoside Hydrolase AT5G27530 47.899 2.26e-99 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0250 K01184 - gmx:100820332 423.32