Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0249 ATGAAAGAATTTATCATTTATATTTTGATTCTGGGTTTTATTTCACCTTGTCTATGTACAAGGTTGAATGTTGGAACCACAAATGTTATTTATAATGTGATGCAATATGGTGCACGTGGTGACGGCAAATCTGATGATTCCCAAGCATTTTTTAGGGCATGGACTAGTGCGTGTAAAGCAACTGGGATGTCAACACTAGTTATACCAGCTGGAAAAATATTCATTGTGTCGAAAGTAACTTTTAGCGGTCCTTGCAACGCCAAAGTTCTTGTTAAGCTTGAAGGGCAAATAGTTGCACCCCCAAGGTCAGAGTGGAAAGACCATTCATATTGGATTGGCATCGAATATGTAAATGAACTTACAATTGATGGAAATGGCATAGGAAGACTCGATGGAGATGGTTCTACTTGGTGGCATTGCCATTGTAATAAACCTGGGGCCTTGTATTTTCATTCCTGCAATGATCTCACTGTTAGTAACATAACTATCACAAATAGTCCAAGTTCTCATGTATCCGTTAATATGTGTCATGGTGCAAAATTCTCTCATATATCCATTAATTCACCTGCTACTAGCCCCAACACGGATGGATTTGACATTTCTTTTTCCACTAATATATTGATACAAGATTCCAACATAAAATCTGGTGATGACTGTATTGCCGTCAATGGTGGCTCCTCTTTAATCAATGCTACACGGGTTACTTGTGGACCGGGCCATGGGATAAGTGTTGGTAGCCTTGGTCTAAAAAGAAATAATGATCAAGTTTCTGATGTTCATGTACGGAATTGCACCTTCATTGGAACTTCAAATGGAGCAAGAATTAAGACAGTTCAAGGTGGTACAGGTTATGCAAAACGTATTACTTTTGAGCAAATCATCCTTGATAATGTTGAGAACCCAATAATTATTGATCAGAAATACAATAGTGGTTTGGAGGATAAAGGTAAAGATGTGTCAGTGACTGATGTAACATATCGAAGATTTACCGGAACTGCCGCTGGCAAAATAGCTATTGATTTGGATTGCAGTTCCTCTGGTTGTTTCGACATTCTATTGGATCAAAATGATATTGTCTCTGCTCAACAAGGAAAGAATATTTCCGTTGTTTGTAATAATGCTCATGGAATTGTTACAAATACTATTCCAAGTGTCACTTGCCTATCTAAATAA 1173 0.3768 MKEFIIYILILGFISPCLCTRLNVGTTNVIYNVMQYGARGDGKSDDSQAFFRAWTSACKATGMSTLVIPAGKIFIVSKVTFSGPCNAKVLVKLEGQIVAPPRSEWKDHSYWIGIEYVNELTIDGNGIGRLDGDGSTWWHCHCNKPGALYFHSCNDLTVSNITITNSPSSHVSVNMCHGAKFSHISINSPATSPNTDGFDISFSTNILIQDSNIKSGDDCIAVNGGSSLINATRVTCGPGHGISVGSLGLKRNNDQVSDVHVRNCTFIGTSNGARIKTVQGGTGYAKRITFEQIILDNVENPIIIDQKYNSGLEDKGKDVSVTDVTYRRFTGTAAGKIAIDLDCSSSGCFDILLDQNDIVSAQQGKNISVVCNNAHGIVTNTIPSVTCLSK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0249 390 SMART pbh1 203 224 IPR006626 -
Mal5g0249 390 SMART pbh1 153 202 IPR006626 -
Mal5g0249 390 SMART pbh1 256 277 IPR006626 -
Mal5g0249 390 SMART pbh1 316 343 IPR006626 -
Mal5g0249 390 SUPERFAMILY Pectin lyase-like 24 388 IPR011050 -
Mal5g0249 390 PANTHER - 1 388 - -
Mal5g0249 390 ProSitePatterns Polygalacturonase active site. 233 246 IPR000743 GO:0004650|GO:0005975
Mal5g0249 390 Pfam Glycosyl hydrolases family 28 58 374 IPR000743 GO:0004650|GO:0005975
Mal5g0249 390 Gene3D - 18 388 IPR012334 -
Mal5g0249 390 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0249 Mal-Chr5 4208020 4211737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0249 30 376 Glycoside Hydrolase AT5G27530 47.753 1.04e-98 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0249 K01184 - gmx:100820332 427.172