Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0248 ATGTTGAAAGTGTTGATTTCTTGTGTTTTGATTCTTGGTTTTTTTTCACCTTGTCTATGTCGGATGTGGATTAATAATGTAGCTGGATCAAACAATAATGTATACAATGTGATTGATTATGGTGCTCATGGTGATGGTACATCTGATGATACACAAGCATTTTTAAGTGCATGGAATAAGACATGTGGAGCAGAAGGGGAAGCAACACTATTTATACCACCAAAAAAATTATACTTGGTGAACAACTTAATATTCAGCGGTGCTTGCAAGGCCACAAATATTCTCATTCAGCTTAAAGGAAAAATAGTTGCACCTCGTAAGGAAGCATTTAAAGATGGGTCATATTGGATTATGATCCAAGATGTAAATGGTCTCACAATTGACGGCACACGCACCGGCAGAATCGACGGCTTTGGTTCTACTTGGTGGCAATGCAAAAGTTGCCCTCGGCCTAGAGCTTTGGCTTTCCATGCATGCAATGATCTTATTGTTAATCACGTGAGGATCACTAATAGTCCAGGAGGTCATATAAGTATAAATGGTTGCAACGGTGCAAAATTTTCCAATTTAGATGTTCAATCTCCTCCTACTAGCCCCAACACCGATGGATTTGACATTTCTTCTTCTAAGAATATCTCAATAGAAGATACTACTATTCGAACAGGTGATGATTGTATTGCCATCAATGGCGGCTCATCTTACATCAATGCTACTCGTGTTGCATGTGGACCAGGCCATGGGATAAGCGTTGGTAGCCTTGGTAAAGGTAATTCTTATGAGACAGTTGAAGAGGTTCATGTACAGAATTGCAGCTTCACTAACACTACAAACGGAGCAAGAATCAAGACATTTCCTGGTGGATCGGGTTATGCAAGAAAGATTACTTTTGAGCAAATCCAGCTTACAAATGTCCAAAATGCAATTATTATAGACCAACACTATGGCGTTAAAGTTGCAACCCAACACTACGACGAATCAGCCGTGAATGTGAGTGATGTGACATATCGTGGGTTTAATGGAACTTCTGCTGGCAACTTAGCTATTAGTCTGAAATGCATGAGTTGTTTCAATGTTGTATTGGATCAAGTTTACATTTTCTCTTCTCAAAAGACAAATGAAGTTCAAGCCTTTTGCCAAAATTTCCATGGAACAATTGGCTCCACTATTCCAAGAGTCAATTGCAAATAA 1188 0.3906 MLKVLISCVLILGFFSPCLCRMWINNVAGSNNNVYNVIDYGAHGDGTSDDTQAFLSAWNKTCGAEGEATLFIPPKKLYLVNNLIFSGACKATNILIQLKGKIVAPRKEAFKDGSYWIMIQDVNGLTIDGTRTGRIDGFGSTWWQCKSCPRPRALAFHACNDLIVNHVRITNSPGGHISINGCNGAKFSNLDVQSPPTSPNTDGFDISSSKNISIEDTTIRTGDDCIAINGGSSYINATRVACGPGHGISVGSLGKGNSYETVEEVHVQNCSFTNTTNGARIKTFPGGSGYARKITFEQIQLTNVQNAIIIDQHYGVKVATQHYDESAVNVSDVTYRGFNGTSAGNLAISLKCMSCFNVVLDQVYIFSSQKTNEVQAFCQNFHGTIGSTIPRVNCK* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0248 395 PANTHER - 4 394 - -
Mal5g0248 395 SUPERFAMILY Pectin lyase-like 26 394 IPR011050 -
Mal5g0248 395 SMART pbh1 262 283 IPR006626 -
Mal5g0248 395 SMART pbh1 291 312 IPR006626 -
Mal5g0248 395 SMART pbh1 209 230 IPR006626 -
Mal5g0248 395 SMART pbh1 159 208 IPR006626 -
Mal5g0248 395 ProSitePatterns Polygalacturonase active site. 239 252 IPR000743 GO:0004650|GO:0005975
Mal5g0248 395 Gene3D - 23 392 IPR012334 -
Mal5g0248 395 Pfam Glycosyl hydrolases family 28 62 376 IPR000743 GO:0004650|GO:0005975
Mal5g0248 395 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 4 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0248 Mal-Chr5 4133199 4135940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0248 31 383 Glycoside Hydrolase AT5G27530 48.056 8.19e-102 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0248 K01184 - gmx:100820332 447.203