Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0239 ATGATGGCAGCATTGAGTAATTGTAGTCCATGGACAAAGCTCGCTACTCCATCTATTCCCTTTCCATTTCTTCATCAATCTTACTCTTCTTACACTTCACGAATCTTCTCATTCCGACGCAAATTCTCTGTCAATGCTCTTTCTCAACAACAATCTCTTCCTGTTCGTGTTCGTTTTGCTCCTTCTCCTACTGGTAACCTTCACGTTGGTGGTGCCAGAACTGCCCTCTTCAACTACTTGTTTGCTAGGTCCAAAGGTGGGAAATTTGTGTTGAGAATTGAGGACACTGATTTGGAGAGGTCTACGAGGGAATCTGAGGAAGCAGTGCTTCGAGATCTTACATGGCTTGGCCTTGATTGGGATGAAGGGCCTGGTGTTGGTGGAGATTATGGTCCATATAGGCAATCTGAGAGGAATTCTATGTACAAAGAATATGCTGAGAAACTTCTTCAATCCGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGATGCTAAACTAAAGAATTTGCCTCCAGTATACACAGGTAAATGGGCCAATGCAACAGATGCGGAAGTAGAAGAAGAGCTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAAGTTTAAAAATTACCGACTTAATACGAGGCGAGGTTAGTTGGAATTTGGATACGCTTGGAGATTTTGTGATAATGAGGAGTAACGGTCAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCTCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTGATATATAAGGCACTAGAATTTCCCATGCCTCATTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAGCGACATGGAGCAACGTCAGTCGGTCAGTACAGGGAAATGGGATATGTGCCTGAGGCAATGAATAATTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTCTTCACCCTTGACAAACTTGTTGAAAGATTCACTATTGAACGTGTGAACAAAAGTGGTGCTGTTTTTGATTCCACAAAGTTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGTTGACCAAACTTATCGGAGAGCGCTGGAAGACATCTGGCATGCTCACAATATCAGAAGGGCCCTTTGTTGATGAATCCATAAACCTACTTAAGGATGGAATTGACTTGATAACTGATGCAGACAGCACACTTTCTAACTTGCTTTCTTATCCTTTACATTCTACTTTACAAAGCCAAGAAGCAGAATCTGTCATACAAGATAACCTTCCTGAGTTTTGTGCCAGCTTCTTGGCTGCCTATGATAGCGGTGATCTTGTAGGTGCACTCGAAGAAGGCCAAGCTGGCTGGAAAAATTGGGTCAAAGGCTTCGGCAAATCACTTAAGCGCAAGGGAAAATCACTCTTCATGCCACTTCGGCTCCTACTGACCGGAAAACTCCACGGACCAGATATTGGGGCTACTGTTGTATTGCTTTATAAAGCCGGAACTACTGGTATCATAGCTTCTGAAGTTGGTTTTGTGACAATTGATGAAAGAGTCAAAATGCTTAGACAAATTAATTGGGAAACACTGTCCAAAGATCACGTTGTGAAGGAGACTGCTCCCACCGTCTAA 1704 0.4284 MMAALSNCSPWTKLATPSIPFPFLHQSYSSYTSRIFSFRRKFSVNALSQQQSLPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTRESEEAVLRDLTWLGLDWDEGPGVGGDYGPYRQSERNSMYKEYAEKLLQSGQVYRCFCSNEELEKMKEDAKLKNLPPVYTGKWANATDAEVEEELAKGTPYTFRFRVPKGSLKITDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPHFAHVSLILAPDRSKLSKRHGATSVGQYREMGYVPEAMNNYLALLGWGDGTENEFFTLDKLVERFTIERVNKSGAVFDSTKLRWMNGQHLRARPSEELTKLIGERWKTSGMLTISEGPFVDESINLLKDGIDLITDADSTLSNLLSYPLHSTLQSQEAESVIQDNLPEFCASFLAAYDSGDLVGALEEGQAGWKNWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDIGATVVLLYKAGTTGIIASEVGFVTIDERVKMLRQINWETLSKDHVVKETAPTV* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0239 567 Gene3D - 437 532 IPR020751 -
Mal5g0239 567 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 364 523 IPR008925 GO:0000049
Mal5g0239 567 CDD GluRS_core 55 377 IPR033910 GO:0006424|GO:0008270
Mal5g0239 567 PANTHER GLUTAMATE--TRNA LIGASE 37 548 - -
Mal5g0239 567 Pfam Anticodon binding domain 405 523 IPR045462 -
Mal5g0239 567 Gene3D HUPs 45 379 IPR014729 -
Mal5g0239 567 SUPERFAMILY Nucleotidylyl transferase 55 363 - -
Mal5g0239 567 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mal5g0239 567 TIGRFAM gltX_bact: glutamate--tRNA ligase 55 525 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Mal5g0239 567 Hamap Glutamate--tRNA ligase [gltX]. 54 547 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Mal5g0239 567 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 37 548 - -
Mal5g0239 567 PRINTS Glutamyl-tRNA synthetase signature 72 83 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mal5g0239 567 PRINTS Glutamyl-tRNA synthetase signature 87 100 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mal5g0239 567 PRINTS Glutamyl-tRNA synthetase signature 243 253 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mal5g0239 567 PRINTS Glutamyl-tRNA synthetase signature 259 267 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mal5g0239 567 PRINTS Glutamyl-tRNA synthetase signature 58 70 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Mal5g0239 567 Pfam tRNA synthetases class I (E and Q), catalytic domain 55 370 IPR020058 GO:0004812|GO:0005524|GO:0043039
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0239 Mal-Chr5 4064787 4074801 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0239 K01885 - gmx:100810730 942.184