Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0112 ATGAATCCCGAATATGATTATCTGTTCAAGCTCCTTCTTATCGGAGACTCTGGTGTTGGTAAATCATGCCTTCTTCTAAGATTTGCTGATGATTCATACATTGACAGCTACATAAGCACCATCGGAGTTGATTTTAAAATACGAACTGTTGAGCAGGATGGGAAGACAATTAAACTACAGATTTGGGACACTGCCGGGCAAGAACGATTTAGGACAATAACCAGTAGCTACTATCGTGGAGCACATGGAATCATTATTGTTTATGATGTGACAGATGAAGAGAGCTTCAATAATGTGAAGCAGTGGCTCAGTGAAATCGACCGCTATGCTAGTGATAATGTTAACAAGCTTTTGGTTGGAAACAAGAGTGATCTGACAGCAAATAGAGTTGTCTCATATGATACAGCTAAAGAATTTGCAGATCAAATTGGCATACCTTTTATGGAAACAAGTGCAAAAGATGCTACAAATGTGGAAGGGGCATTCATGGCCATGGCTGCTGCCATCAAGGAGAGAATGGCGAGTCAACCAGCCGCAAACAATGCAAGGCCACCGACAGTGCAGATTAGAGGACAACCAGTTGGGCAAAAAAGTGGGTGCTGCTCTTCTTAA 612 0.4199 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTANRVVSYDTAKEFADQIGIPFMETSAKDATNVEGAFMAMAAAIKERMASQPAANNARPPTVQIRGQPVGQKSGCCSS* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0112 203 Gene3D - 2 195 IPR027417 -
Mal5g0112 203 SMART arf_sub_2 1 177 - -
Mal5g0112 203 PANTHER LD21953P-RELATED 6 202 - -
Mal5g0112 203 SMART rab_sub_5 9 172 - -
Mal5g0112 203 ProSiteProfiles small GTPase Arf family profile. 2 182 - -
Mal5g0112 203 MobiDBLite consensus disorder prediction 175 203 - -
Mal5g0112 203 PRINTS Transforming protein P21 ras signature 147 169 - -
Mal5g0112 203 PRINTS Transforming protein P21 ras signature 32 48 - -
Mal5g0112 203 PRINTS Transforming protein P21 ras signature 9 30 - -
Mal5g0112 203 PRINTS Transforming protein P21 ras signature 112 125 - -
Mal5g0112 203 PRINTS Transforming protein P21 ras signature 50 72 - -
Mal5g0112 203 PANTHER RAS-RELATED PROTEIN RABD2A-LIKE 6 202 - -
Mal5g0112 203 TIGRFAM small_GTP: small GTP-binding protein domain 7 163 IPR005225 GO:0005525
Mal5g0112 203 Pfam Ras family 10 170 IPR001806 GO:0003924|GO:0005525
Mal5g0112 203 SMART rho_sub_3 11 171 IPR001806 GO:0003924|GO:0005525
Mal5g0112 203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 193 IPR027417 -
Mal5g0112 203 ProSiteProfiles small GTPase Ras family profile. 1 203 IPR001806 GO:0003924|GO:0005525
Mal5g0112 203 SMART ran_sub_2 14 202 - -
Mal5g0112 203 MobiDBLite consensus disorder prediction 179 203 - -
Mal5g0112 203 CDD Rab1_Ypt1 7 172 - -
Mal5g0112 203 SMART ras_sub_4 6 172 - -
Mal5g0112 203 ProSiteProfiles small GTPase Rab1 family profile. 4 203 - -
Mal5g0112 203 ProSiteProfiles small GTPase Rho family profile. 2 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0112 Mal-Chr5 2221653 2225722 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0112 K07874 - gmx:100306147 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0112 5 2221653 2225722 Mal5g0112 5 2221653 2225722 ECH
Mal5g0112 5 2221653 2225722 Mal3g2953 3 104173440 104176506 PCT