LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0109	ATGATTTGTGCTATCAGTAACATGGCTCTGCCACTTGTCATCTCCGTTTTCAAACCTCTCTCCACCACCACCCGTCTCCACTCCACACTCCTACGCCGCCGCCGTTTCACCACCACCACCACTCTCTCCGCCACCACCACACCTTCACCTTCATCTTCCACTTCAACTTCTCTCTCTCAACATTCCAACAATTCTTCTCCTCACAACCATTCATCTCTCACTTTTCAGCAAGCCATACAACGCCTTCAGGAATATTGGGCTTCAGTTGGTTGTTCTATTATGCAATGCAGCAACACAGAGGCTAGAAATTGGTTTCTATATGATGCAGTTATGTGGTATGTTGAGGGTTTCGGATTTGAAATTCTTGGTGTTTTTGTTTTTCCTGATGAAAGGTATGTGGAACCTAGCATCCGCCCTGATGATAGTCGATATGGAGAAAACCCAAATAGGCTCCAAAGACACACTCAATTTCAGGTAATATTGAAGCCTGATCCTGGAAATTCACAGGACCTTTTTATCCGCAGCCTTTCAGCTTTAGGTATTGATGTTACTGCACATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTTCTCGGTGCTTGGGGTTTGGGATGGGAAATCTGGATGGATGGAATGGAGATTACTCAATTCACCTACTTTCAGCAGGCTGGAAGTCTCCCCTTATCACCAGTATCGGTAGAAATCACTTATGGCCTGGAGCGTATCCTCATGTTACTGCAGGGTGTTGATCACTTCAAAAAGATCAAATATTCTGATGGAATTACTTACGGAGAACTGTTCTTGGAGAATGAAAAGGAAATGAGTGCGTATTACTTGGAGCATGCCGGTGTTGATCATCTTCAAAAACATTTTGATTTCTTTGAGGAGGAATCTCGTCATTTACTTTCTTCAGGCCTCGCGATCCCTGCGTATGATCAGCTTCTGAAAACATCTCATGCTTTTAATATTTTAGACGCCAGAGGTTTTGTTGGAGTAACAGAGCGGGCTCGATATTTTGGTCGCATGCGTAGTTTAGCTCGCCAGTGTGCTCAACTTTGGTTGAAGACCAGAGAGACGCTTGGCTTCCCCCTTGGTTTGATCTCAGAACCTGATCAGTCTGTAACTCCAAAGGATGTTTTGGAGGCTGCTTGTGAGAAGGTTCATGACCATGAAAGAGCATTTGTTCTTGAAATTGGAACTGAAGAGATGCCACCTCAAGATGTTGTTGATGCAAGCAAGCAACTGAAGGATTTAATCTTGCAATTACTGGAACGACAGAGGTTAAAGCATGGTGACGTGCAGGTTTTTGGCACTGCTCGGAGACTAGTGGTTTCTGTCGAAAATCTTTTCACAAAGCAAACAGAACAAGAGGTTGAGGTTCGAGGTCCTCCTGTTTCAAAAGCATTTGATCTTGAAGGAAATCCAACAAAGGCTGCTGAGGGGTTTTCCCGTAAAAACTCTGTTCCACTGGACTTGATATACAGAAAGGTTGATGGGAAAACAGAATATGTATATGCTCGTATAAAAGAATCTTCAAGACATGCTTTGGAGGTTTTATCTGAAGATTTGCCAGCTACTATTTCTAAAATTTCATTTCCGAAGACAATGCGATGGAATTCACAGGTGATGTTTAGCAGGCCTATCCGTTGGATTTTGGCTTTGCATGGAGATGTCGTGGTCCCGTTTATGTTTGCTGGGGTAATGAGTGGAAACTTGTCTTGCGGTCTTCGTAATACGACATCAGCCGTTGTTCAGATAGAAAATGCAGAATTGTATTTAGTTGCAATGAAAAATGCAGGAGTCAATGTTGAATTTGAGGACCGTAAGAAAAAAATTGTAGAGCAGTCTAATACATTAGCAGAAAGTGTAAATGGCCAAATTCTGATTCCGAAAGGTTTGCTTGATGAGGTTGTAAATCTTGTTGAGGCACCTATTCCAGTGCTTGGAAAGTTTAAAGAAACCTTCTTAGATCTTCCAAAGGATCTTTTGACTATGGTTATGCAAAAACACCAGAAATATTTTGCTGTATGTGATGCTAATGGACAGTTGCTGCCTTACTTTATTGCTGTTGCAAATGGAGCAATTGATGAGGCTACAGTGAGGAAAGGAAATGAAGCTGTGCTCAGGGCTCGCTATGAAGATGCTAAGTTCTTTTATGAGTTGGACACTCGTAAAAGGTTTTCAGAATTCCGAGAGCAACTAAAAAATATTCTCTTTCATGAGAAACTTGGGACCATGCTGGATAAAATGACTCGTGTTGAAAACATGGTTACTAAACTAAGTTGCATCCTGGAAATTAATGAAGATATGCAACAAATTATCCGGGAAGCTGCCTCACTTGCCATGTCTGACCTTTCTACATCAGTTGTCACTGAATTTACCGCACTTTCAGGAGTAATGGGACGTCACTATGCCCTTAGAGATGGATACTCAGAACAGACTGCAGATGCCTTGTATGAGATCACACTTCCTAGATTTTCTGGGGACATACTTCCTAAAAGCGACGCTGGCATAGTTTTGGCAATTGCTGATAGATTAGATAGCCTGGTAGGTTTATTCACCGCTGGCTGTCAACCTAGTTCCACAAATGATCCATTTGGTCTGCGAAGAATCTCATATGGTCTTGTGCAATTGTTGGTGGAAAAGAATAAAAACCTAGATTTTAAAGAGGCTCTGGAACTTGCTGCAGATGTCCAGCCAATTAAAGTAAATCCTCAAGTAATAGACGAAGTACGTCAATTTGTTACCCGAAGATTAGAGCAATTTCTGGTGGACAAGGGGGTGAGTGCAGAAATTGTTCGTTCCATCCTTGCAGAGAGGGCTAATTTTCCCGGTCTAGCAGCAAAATCAGCATATAAAATGGAAGAATTATCAAAAGGCGAGCTTTTCCCTAAAGTAGTTGAAGCATACTCTCGGCCAACTAGAATTGTCCGTGGGAAGGAAGACGAGCTTGATGTGGAGTATCAGGTGGATGAGGCTGCCTTTGAGACAAATGAAGAGAGAGTTTTGTGGAACACATTTTTGTCAGTTCAAAAGAGTATCAATCCTGGTCTTGACATAGATGATTTTGTTGAAATTTCATCCCAACTTATACAACCACTCGAAGATTTCTTTAATAATGTCTTTGTAATGGTGGATGATGCTAAGATCAGAAAAAACAGGCTAGCTCTGCTAAAAGGAATTGCTGAACTCCCTAAAGGAATTGCAGACCTTACATTGTTACCAGGATTTTAA	3240	0.4191	MICAISNMALPLVISVFKPLSTTTRLHSTLLRRRRFTTTTTLSATTTPSPSSSTSTSLSQHSNNSSPHNHSSLTFQQAIQRLQEYWASVGCSIMQCSNTEARNWFLYDAVMWYVEGFGFEILGVFVFPDERYVEPSIRPDDSRYGENPNRLQRHTQFQVILKPDPGNSQDLFIRSLSALGIDVTAHDIRFVEDNWESPVLGAWGLGWEIWMDGMEITQFTYFQQAGSLPLSPVSVEITYGLERILMLLQGVDHFKKIKYSDGITYGELFLENEKEMSAYYLEHAGVDHLQKHFDFFEEESRHLLSSGLAIPAYDQLLKTSHAFNILDARGFVGVTERARYFGRMRSLARQCAQLWLKTRETLGFPLGLISEPDQSVTPKDVLEAACEKVHDHERAFVLEIGTEEMPPQDVVDASKQLKDLILQLLERQRLKHGDVQVFGTARRLVVSVENLFTKQTEQEVEVRGPPVSKAFDLEGNPTKAAEGFSRKNSVPLDLIYRKVDGKTEYVYARIKESSRHALEVLSEDLPATISKISFPKTMRWNSQVMFSRPIRWILALHGDVVVPFMFAGVMSGNLSCGLRNTTSAVVQIENAELYLVAMKNAGVNVEFEDRKKKIVEQSNTLAESVNGQILIPKGLLDEVVNLVEAPIPVLGKFKETFLDLPKDLLTMVMQKHQKYFAVCDANGQLLPYFIAVANGAIDEATVRKGNEAVLRARYEDAKFFYELDTRKRFSEFREQLKNILFHEKLGTMLDKMTRVENMVTKLSCILEINEDMQQIIREAASLAMSDLSTSVVTEFTALSGVMGRHYALRDGYSEQTADALYEITLPRFSGDILPKSDAGIVLAIADRLDSLVGLFTAGCQPSSTNDPFGLRRISYGLVQLLVEKNKNLDFKEALELAADVQPIKVNPQVIDEVRQFVTRRLEQFLVDKGVSAEIVRSILAERANFPGLAAKSAYKMEELSKGELFPKVVEAYSRPTRIVRGKEDELDVEYQVDEAAFETNEERVLWNTFLSVQKSINPGLDIDDFVEISSQLIQPLEDFFNNVFVMVDDAKIRKNRLALLKGIAELPKGIADLTLLPGF*	1080

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0109	1079	SUPERFAMILY	Class II aaRS and biotin synthetases	74	360	IPR045864	-
	Mal5g0109	1079	ProSiteProfiles	Heterodimeric glycyl-transfer RNA synthetases family profile.	750	1041	IPR006194	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	236	251	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	156	176	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	135	150	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	187	211	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	321	337	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PRINTS	Glycyl-tRNA synthetase alpha subunit signature	213	233	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	Gene3D	Bira Bifunctional Protein; Domain 2	59	284	IPR045864	-
	Mal5g0109	1079	ProSiteProfiles	Heterodimeric glycyl-transfer RNA synthetases family profile.	74	356	IPR006194	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	Hamap	Glycine--tRNA ligase beta subunit [glyS].	393	1076	IPR015944	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	TIGRFAM	glyS: glycine--tRNA ligase, beta subunit	393	1076	IPR015944	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	MobiDBLite	consensus disorder prediction	41	71	-	-
	Mal5g0109	1079	Pfam	Glycyl-tRNA synthetase beta subunit	396	940	IPR015944	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	PANTHER	GLYCYL-TRNA SYNTHETASE	392	1079	IPR015944	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	SUPERFAMILY	HD-domain/PDEase-like	728	857	-	-
	Mal5g0109	1079	Pfam	Glycyl-tRNA synthetase alpha subunit	75	360	IPR002310	GO:0000166\|GO:0004820\|GO:0005524\|GO:0005737\|GO:0006426
	Mal5g0109	1079	Gene3D	Class II aaRS and biotin synthetases; domain 2	285	364	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0109	K14164		-	gmx:100787365	1712.97

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g0109	5	2189173	2205596	Mal5g0109	5	2189173	2205596	ECH