Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0032 ATGTTCCTTTCATTTAGATACTCCTTCACATTTCTCTTCACTACTCTTCTCCTCACATTATCATCATCTTCACACATTGCTTCACAAACTACAACACTTCCACCACCACCAGCCTCCAAAATATCCATCACAAACCACAACATTCATAGCTTCACCAATGCTGGCAGAGGCAAAAACATCTCAGGAATATCACAATTCAAAAGATACCTATCTCGTTTCGGATACTTTGATCATAACAATAACACCAACACATTCAGTGACGAATTTGATGCCAATTTTGAATCAGCTCTCATCAAATACCAAAGAAATCTTGGACTCCAAGTAACAGGTAAACTCGATTCCAGCACAGTTTCTCAAATGATCACACCAAGATGCGGTGTTCCAGACACAACAAAAACTCATCATCATCATAATCACCATCAAAATCATATTCATAACACGACGAATTTTGTTTATTTTCCCGGAAAACCACGATGGTCACGTGACATGCCAATGACACTAACATATGGCTTCTCACATGACTACATGATTCATAATTTGAGCATACAAGATATAAGACAAGCATTCAAAAGAGCATTCTCTAGATGGAGTTCAGTTATTCCGGTTAGTTTTGTCGAAGCAGAGGATTACGATTTCGCGGATATAAAAATAGGATTTTATAGTGGTGACCATGGTGATGGTGAGCCATTTGATGGTGTTCTTGGTGTGCTAGCGCATTCGTTCTCACCGGAGATCGGAAGACTCCACCTCGATGCAGCGGAGACATGGGCGGTTGATTTCAGAGTAACGAAATCGGAGGTGGCAATTGATTTGGAGTCAGTTGCAACACATGAGATTGGACATTTGTTAGGTTTGTCACATAGTTCTTTGAAAGAGGCAGTGATGTATCCAAGTTTAAGGCCAAGAGATAAAAGAGCTGATTTGAATATTGATGATATTAAAGGAGTACAATCTCTTTATGGTACTAATCCTAATTTTAGATCTCAATGGTCATCATTGGAATCTGATATCTCCACAAATCATGGTGCAAAGTTTGGAATTCACACTTTCAGGTTCTCTATGATTGGTTTCATTATTGTAATTGCCTTGTTTTATAATTTCAACATTTTTTAA 1113 0.3819 MFLSFRYSFTFLFTTLLLTLSSSSHIASQTTTLPPPPASKISITNHNIHSFTNAGRGKNISGISQFKRYLSRFGYFDHNNNTNTFSDEFDANFESALIKYQRNLGLQVTGKLDSSTVSQMITPRCGVPDTTKTHHHHNHHQNHIHNTTNFVYFPGKPRWSRDMPMTLTYGFSHDYMIHNLSIQDIRQAFKRAFSRWSSVIPVSFVEAEDYDFADIKIGFYSGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFRVTKSEVAIDLESVATHEIGHLLGLSHSSLKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGTNPNFRSQWSSLESDISTNHGAKFGIHTFRFSMIGFIIVIALFYNFNIF* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0032 370 PRINTS Matrixin signature 213 241 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g0032 370 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g0032 370 PRINTS Matrixin signature 308 321 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g0032 370 PRINTS Matrixin signature 189 204 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g0032 370 PRINTS Matrixin signature 274 299 IPR021190 GO:0004222|GO:0006508|GO:0008270
Mal5g0032 370 SUPERFAMILY PGBD-like 55 130 IPR036365 -
Mal5g0032 370 CDD ZnMc_MMP 158 321 IPR033739 GO:0008237|GO:0008270
Mal5g0032 370 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 151 324 - -
Mal5g0032 370 Gene3D Collagenase (Catalytic Domain) 54 326 IPR024079 GO:0008237
Mal5g0032 370 Pfam Matrixin 159 321 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Mal5g0032 370 PANTHER MATRIX METALLOPROTEINASE 31 363 - -
Mal5g0032 370 Pfam Putative peptidoglycan binding domain 62 120 IPR002477 -
Mal5g0032 370 SMART col_5 155 322 IPR006026 GO:0006508|GO:0008237|GO:0008270
Mal5g0032 370 PANTHER METALLOENDOPROTEINASE 4-MMP 31 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0032 Mal-Chr5 532627 533739 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0032 - K07999 gmx:100781237 476.092