Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3890 ATGGAGGCAGTAGAACCAGTTGAACCACAATCCATCAAGAAGCTTAGCTTCAAATCCCTAAAACGTGCCCTCGATCTCTTCTCTCCCGTTCATCAACAACTTCCTCCTCCCGATCCCGAAAGCAAGAAAATTCGTGTTAATTACAAGGTATATGCTGAGTATGGTGGAATTAAAAGCACTACTCAACCTCCCCAACAGTCAAATTCTGCCGCACAGAATCACTCTCAACAAGCAGGGTCTTCTAGCATGCTTGCTCTTCCAGGTCCAGGAGACTCCAAGGATCTCCAGAAAGGAGGGGCCCAGAATGCTTTGGTTGTTGGTCCAGCTATGCCATCCACAGCTACGAATGGTCTTGGTTTTCAGGGCAAAAATACAGTAGTTGTTTCTACCTCTGGCTCATCTGAAAGGAATTTCTCAACATCTGCTTTGATGGAGAGAATGCCAAGTAAATGGCCTCGACCTGTGTGGCATGCACCGTGGAAAAACTATCGGGTCATCAGTGGTCACTTAGGATGGGTGAGATCTGTTGCTGTTGATCCCAGTAATACATGGTTTGCTACTGGTTCTGCAGATCGAACTATCAAGATATGGGACTTGGCAAGTGGTGTTCTAAAGCTCACATTAACAGGTCACATTGAACAAGTAAGAGGCCTTGCTATTAGCCACAAACATACTTACATGTTTTCTGCTGGTGACGATAAACAAGTTAAATGTTGGGATCTTGAACAGAATAAGGTTATTAGGTCTTATCACGGTCATCTGAGTGGTGTTTATTGCTTGGCGATTCATCCCACAATTGACATTTTACTGACTGGGGGACGTGATTCTGTCTGTCGGGTCTGGGACATACGTAGTAAAATGCAGATTCATGCTCTTTCAGGCCATGAGAACACTGTCTGCTCTGTGTTTACACGGCCAACGGACCCTCAAGTTGTCACTGGTTCTCACGATTCTACAATCAAGATGTGGGACCTTAGATATGGTAAAACAATGTCAACTCTTACAAACCATAAAAAGTCTGTTCGAGCAATGGCTCCGCATCCTAAAGAGCAAGCTTTTGCATCTGCATCGGCTGATAATATTAAAAAGTTCACCCTTCCAAAAGGAGAATTTTGTCACAATATGCTCTCTCAACAGAAAACTATTATCAATGCAATGGCTGTGAATGAGGAGGGTGTTATGGTTACCGGAGGTGACAATGGCAGTATGTGGTTCTGGGATTGGAAGAGTGGTCACAACTTCCAGCAATCTCAAACAATTGTACAACCTGGTTCACTGGACAGTGAAGCTGGTATTTATGCTTTAACCTATGATGTCACGGGCACGAGGCTTATATCATGTGAAGCCGACAAGACCATAAAAATGTGGAAAGAAGATGACAATGCAACTCCAGAAACACATCCCCTCAACTTCAGGCCTCCTAAAGACATCCGTCGATTCTAG 1443 0.4421 MEAVEPVEPQSIKKLSFKSLKRALDLFSPVHQQLPPPDPESKKIRVNYKVYAEYGGIKSTTQPPQQSNSAAQNHSQQAGSSSMLALPGPGDSKDLQKGGAQNALVVGPAMPSTATNGLGFQGKNTVVVSTSGSSERNFSTSALMERMPSKWPRPVWHAPWKNYRVISGHLGWVRSVAVDPSNTWFATGSADRTIKIWDLASGVLKLTLTGHIEQVRGLAISHKHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLAIHPTIDILLTGGRDSVCRVWDIRSKMQIHALSGHENTVCSVFTRPTDPQVVTGSHDSTIKMWDLRYGKTMSTLTNHKKSVRAMAPHPKEQAFASASADNIKKFTLPKGEFCHNMLSQQKTIINAMAVNEEGVMVTGGDNGSMWFWDWKSGHNFQQSQTIVQPGSLDSEAGIYALTYDVTGTRLISCEADKTIKMWKEDDNATPETHPLNFRPPKDIRRF* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3890 480 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 285 - -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 202 - -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 291 IPR001680 GO:0005515
Mal4g3890 480 MobiDBLite consensus disorder prediction 460 480 - -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Mal4g3890 480 MobiDBLite consensus disorder prediction 58 83 - -
Mal4g3890 480 SUPERFAMILY WD40 repeat-like 155 457 IPR036322 GO:0005515
Mal4g3890 480 PANTHER BNAA01G27690D PROTEIN 6 480 - -
Mal4g3890 480 Gene3D - 145 480 IPR015943 GO:0005515
Mal4g3890 480 SMART WD40_4 159 198 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 369 407 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 243 282 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 327 365 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 285 324 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 201 240 IPR001680 GO:0005515
Mal4g3890 480 SMART WD40_4 419 457 IPR001680 GO:0005515
Mal4g3890 480 PRINTS G protein beta WD-40 repeat signature 311 325 IPR020472 -
Mal4g3890 480 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Mal4g3890 480 PRINTS G protein beta WD-40 repeat signature 185 199 IPR020472 -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 249 IPR001680 GO:0005515
Mal4g3890 480 PANTHER WD40 REPEAT PROTEINPRL1/PRL2-RELATED 6 480 IPR045241 GO:0000398
Mal4g3890 480 Pfam WD domain, G-beta repeat 245 282 IPR001680 GO:0005515
Mal4g3890 480 Pfam WD domain, G-beta repeat 428 457 IPR001680 GO:0005515
Mal4g3890 480 Pfam WD domain, G-beta repeat 161 198 IPR001680 GO:0005515
Mal4g3890 480 Pfam WD domain, G-beta repeat 206 240 IPR001680 GO:0005515
Mal4g3890 480 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 326 - -
Mal4g3890 480 ProSitePatterns Trp-Asp (WD) repeats signature. 311 325 IPR019775 -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 208 245 - -
Mal4g3890 480 MobiDBLite consensus disorder prediction 58 97 - -
Mal4g3890 480 CDD WD40 162 457 - -
Mal4g3890 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 207 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3890 Mal-Chr4 113124249 113132257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3890 247 456 Miscellaneous Gene Families AT5G08390 30.093 3.35e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3890 K12862 - gmx:100782357 871.307