Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3887 ATGATAGACCTCAAATACATATGGGTGCTAGTTTCAATCAACAGGTACATTCTCAACACAATAGAAGATGAAAAAACAAGAAACACTCTAAAATTGAGATGTATCTCAAACTTAAGGACTCAAAACCAAGAATTCTTTGAATTCTCTGACCAATCAGTCCTATCCAATCTTTATTATGGCATTGACACCATTGAAACTGCAATTCAATCACAACATCCAGAACAAAGATCTTTTAACCTTAAAAATTCAGAACAAATGCTTCAAGTTCCAGCAATGCTTGATGAAGATGAATTCACAGCTTCAATTCCAAATCATTACTTGGTTTGTTGCTCTTACTTTTACCTCTCAGTTGTTAGGAAGCTTCAAGGTGATGAATGGCAAGCTGCACTTCATTTTCTTCAAGCTGTTTTGGTTTCTCCAAAGCTTGTTTGGAATGAATTTGCACCACAACTTTGTGAAAGTCTTTTCAAGAAGCATGGAAATAGAAGTTTGGAATTTGTTACTTCTTTGAATTCTGAGGAAGGAATCAATGAAGCAATTGTTAAGGAGAAGGCAAGGAGATACAAGGAGTGTTTGGTGTATTATCAGGTCATGCTTTATGGGGAGATTCCATGGTGGAGCAGTTATTGCAGCAACAATTCAGCAAATTATATGGATGTATCAAATACCAGTGTATCTTCTACTTCAGTTCAACATGGACAAAGATTGAAAACTTGCAATACATATGAGAAGGTTCACCCAATGGATCCTCAAAATGTGATGCAAGAACATTTGAATGCAAAAAACAAAATTAACCTTGATTCAAGAAAATTCACCAGGTCCACAGAAGATGTAGTTGCTTTATCGATCTCGAAACGGATAGAAAAAATGAGCATCGATTTAAATTTCCGTGTCGAGGATTTATTAATCGAAGAAGCATTGCAGCCACTAGAATTCCATCTCTTTGATCATGCAAGCAGCTATCAAAGACTCGGCCAGAAAAACCGCGAAGAAAGTTCTAAGATGAAATTGCAAGCATTAGTAAAATGTGGTGAAGAATATATTGTAGACACTGCATCGATTTTCGAGAGTTTAATAAGTTCATCAGGAACTAATTATGGTTCATTAAAGGATGTGATTTTGGATGAACTACTCATAGTGATCTCAACTTCAAAAGAGGAAAAGGAACTAAGAACATCGGTATCAATTCTAACAACAATAATTTCAAGGAACAAGTCAATTATAGAAGATGTGAAGAAAAAAGGTTTAAGGTTATGTGATTTAGCAAGTGCTCTAAAACAAAATGTTCATGAAGCAGCAATTCTAATCTATTTAATAAATCCAGCTCCTATAGATATAAAAACATTGGAACTTCTGCCAATATTAATAGAGATTGTATGCACTTCATCACAAAATTGTCACAAGAGTACTCAGCAAGAATCACTTCTTTTGACACCTCATGCAGCATCACTGATGATCATCGAAGAGCTTGTAACTTCATTTGACTATGCTACAAATAACATGCATTTGGAAGTAATCAGTTCCCCTCATGTTCTCAGTGGACTTCTAGAAGTTGCAAGAAATGATAATCTTGAAGAGTTTTTGTCTTTGACTACCATTCTTATAAAGTGTATGCAGTTTGATTCACAGTGCAGAAAGTATGTATCACAGTTTAGTCCTTTTGCTCCTTTTCTACACCTTCTACAGACAGAAAATATTCGCGCCAAATGCATGGCGCTTGAGTTTTTTCATGAAATCCTACGCATACCGCGATCATCCGCTATTAATCTGCTGCAGCGGATAAAGAAAGAAAGCAGAATCAATATTATGCAGATACTAATGCATTGTGCTCATCAGTTACAACCTGATCACCAGATTTTAGCTGCAAACATATTGCTTCAGTTAGACACATTGAACCCAACTGATAAAAGCTTGTTCAGAGAAGAAGCTATTCAGATTCTTCAAAGGGCATTGACATCACAAGAAAGCTCTGAACAGATATTATCTGCTTCCATTCTTTCAAATCTTGCTGGTACATATGCTTGGACAGGAGAATCATATACAGCTGCATGGTTTCTGAAAAAGACAGGCTTGAACTCTCCCTATCACCAAAATATGATAAGAAACTTCAACTGGTTGGATCAGAGTCTGCAGGATACAAGCATAGATGTGTGGTGCAGTAAAATTGCCAAATGTATCATTAGTGTTGGAGATTCCATCTTCTATACTTTAGAGAGGGGACTAAGAAGCAAGATTAAAAAGGTTTCTAGAGATTGTCTTGTAGCTATTTCATGGCTTGGATGTCAAATATCAAAAAGTCCAGATAGCCTCAGTAATTCTGCATCTGAGATTATACTAAGAGGAATTGAGCAATTTCTACATCCTGGAATGGAATTGGATGAAAGACTTTTGGCATGTATGTGCATGTTTAATTATGCCTCTGGTAAAGGAAAGCAAAAACTAATACATTTCTCAGAAGGAGTAAAAGAATCATTAAGACGACTTTCGAGCATAACTTGGATGGCTGAGGAGTTACATAGGGTAGCTGATTTCTTGCTTCCAAACACATCACGTATTTCTTGCGGTCACACACAAATCCTTGAGGCAGGTCGCAACTTTAGCGCATCAGTTTGCTCCCTCATATACTACAAGGGACTGTTATTCAGTGGATATTCAGATGGATCAATTAAGGTCTGGGATATTAGGGGGCACTCAGCTAGTCTTTTATGGGACATTAAAGAGCACAAGAAGTCGGTGACATGCTTTTCAATTTATGAACCACTAGACAGTCTTTTAAGTGGATCCACTGATAAAACCTTAAGGGTGTGGAAAATGAACCAAAGAAATCTTGAATGTCTTGAAGTAATAGCCATGAAGGAACCAGTTCATCATTTGCGCGCACATGGCGAGACAATTATCGCAATTAGTGAAAGACAAGGAATAAAGCTTGTTAACAAATCAAGAGAGATAAGAGATATTTTCAAAGGTAAGCATGGGAAGTGCATGACACTGGCTCAAGGAAAGTTATATATTGGCTGCACAGATTCAAGCATACAGGAGTATTCTACAGCACAAAATAGGGAACTTGAAATCAAACCACCTACAAGAAGTTGGAGGAAGCAAAGTAAGCCAATCAATTCAATTGTAACCTATAGAGATTGGCTATATAGTGCAAATAAGCTTGTTGAAGGAACAACATTCAAGGAATGGAAAAGAAGTGGAAAACCTAAAATTTCAATCCTTACTGACAAAGGAGATAATGTGGTAGCCATGGAAGTGGTAGAAGACTTCTTATACCTAATTTCCAGCTCATCTGCAAGCAGCATTCAGATCTGGTTGAGAGGAGTACCAAAAAAGTTGGGGAGAATATCAGCAGGGAGCAAGATAACAAGCATCTATGCTGCCAATGACATTATCTTTTGTGGTACTGAAAAGGGACTAATCAAGGGCTGGATCCCTCTGTAG 3444 0.3711 MIDLKYIWVLVSINRYILNTIEDEKTRNTLKLRCISNLRTQNQEFFEFSDQSVLSNLYYGIDTIETAIQSQHPEQRSFNLKNSEQMLQVPAMLDEDEFTASIPNHYLVCCSYFYLSVVRKLQGDEWQAALHFLQAVLVSPKLVWNEFAPQLCESLFKKHGNRSLEFVTSLNSEEGINEAIVKEKARRYKECLVYYQVMLYGEIPWWSSYCSNNSANYMDVSNTSVSSTSVQHGQRLKTCNTYEKVHPMDPQNVMQEHLNAKNKINLDSRKFTRSTEDVVALSISKRIEKMSIDLNFRVEDLLIEEALQPLEFHLFDHASSYQRLGQKNREESSKMKLQALVKCGEEYIVDTASIFESLISSSGTNYGSLKDVILDELLIVISTSKEEKELRTSVSILTTIISRNKSIIEDVKKKGLRLCDLASALKQNVHEAAILIYLINPAPIDIKTLELLPILIEIVCTSSQNCHKSTQQESLLLTPHAASLMIIEELVTSFDYATNNMHLEVISSPHVLSGLLEVARNDNLEEFLSLTTILIKCMQFDSQCRKYVSQFSPFAPFLHLLQTENIRAKCMALEFFHEILRIPRSSAINLLQRIKKESRINIMQILMHCAHQLQPDHQILAANILLQLDTLNPTDKSLFREEAIQILQRALTSQESSEQILSASILSNLAGTYAWTGESYTAAWFLKKTGLNSPYHQNMIRNFNWLDQSLQDTSIDVWCSKIAKCIISVGDSIFYTLERGLRSKIKKVSRDCLVAISWLGCQISKSPDSLSNSASEIILRGIEQFLHPGMELDERLLACMCMFNYASGKGKQKLIHFSEGVKESLRRLSSITWMAEELHRVADFLLPNTSRISCGHTQILEAGRNFSASVCSLIYYKGLLFSGYSDGSIKVWDIRGHSASLLWDIKEHKKSVTCFSIYEPLDSLLSGSTDKTLRVWKMNQRNLECLEVIAMKEPVHHLRAHGETIIAISERQGIKLVNKSREIRDIFKGKHGKCMTLAQGKLYIGCTDSSIQEYSTAQNRELEIKPPTRSWRKQSKPINSIVTYRDWLYSANKLVEGTTFKEWKRSGKPKISILTDKGDNVVAMEVVEDFLYLISSSSASSIQIWLRGVPKKLGRISAGSKITSIYAANDIIFCGTEKGLIKGWIPL* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3887 1147 SMART WD40_4 1067 1106 IPR001680 GO:0005515
Mal4g3887 1147 SMART WD40_4 853 893 IPR001680 GO:0005515
Mal4g3887 1147 SMART WD40_4 898 937 IPR001680 GO:0005515
Mal4g3887 1147 Gene3D - 840 1146 IPR015943 GO:0005515
Mal4g3887 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 895 IPR001680 GO:0005515
Mal4g3887 1147 ProSiteProfiles Trp-Asp (WD) repeats profile. 905 939 IPR001680 GO:0005515
Mal4g3887 1147 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 7 246 - -
Mal4g3887 1147 PANTHER OS04G0584500 PROTEIN 7 246 - -
Mal4g3887 1147 PANTHER OS04G0584500 PROTEIN 339 1147 - -
Mal4g3887 1147 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 339 1147 - -
Mal4g3887 1147 SUPERFAMILY WD40 repeat-like 875 1144 IPR036322 GO:0005515
Mal4g3887 1147 Pfam WD domain, G-beta repeat 902 937 IPR001680 GO:0005515
Mal4g3887 1147 Gene3D - 351 832 IPR011989 -
Mal4g3887 1147 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 905 939 - -
Mal4g3887 1147 SUPERFAMILY ARM repeat 504 822 IPR016024 -
Mal4g3887 1147 ProSitePatterns Trp-Asp (WD) repeats signature. 880 894 IPR019775 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3887 - - mtr:MTR_2g436530 2076.6