Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3705 ATGGCATCTTTGGACAAGGAAATCGTGCTAATCATTCTTCAATTTCTTGAGGAAGAGAATTTGAAGGAAACAATGCACAAGTTGGAGCAAGAATCTGGTCTCTTCTTCAACTTTAAGTATTTTGAAGAGAAGATCTTTGCTGGTGATTGGGATGAGTGTGAGAAGTACCTCAATGGATTTACAAAACTGAATGAAAATCGACACTCTATGAATATGTTTTTTGAGATTAGGAAGCAAAAATATTTTGAAGCCTTGGACAGGCATGACAAAGCGGCAGCAGTTGAAATTCTAGTAAACGACTTGAAAATATTTTCAACATTTAATGAGGGTTTGTACAAGGAACTAGCAAATCTTATAACCCTTGGAAATATTAGGGAGAATCAACAATTATCAAAGTTTGGAGATACTAGATCATCTAGAATCTTGTTGACGATAGAGCTGAAGAAATTTATTGACATTAATCCTAGCTTCAAGAACAAACTTAGGTTTCCTTCATTGAATTCCTCGCGGCTGCGACGCCTGATTAATCAAAGTTTGAATTGGCAGCATAAGCTATGTGGGAATCCAAAGGAAAACCCAAACATCAAAAGTTTGTTAACTGATCATACTTGTTCTCCGTGTCGAAGTGGAACTCGCACACCTACTTTGGCTTTGCTTCCTGCTGCACCACTTCCGTCAGCCCCTGCGGATCCTAGTGCTAATGTTGTAGCAGCACAGATGGTGAATGGAAATCCTTCCTCATCTTATCAATCACTTGCTGCGTTTGCAGCTTCCTCACTGCCGGGTCCTTCTGATCGAGTCACGAATACCTGTACACCTCAACCAGCGCCTCGGTTGTTTGACGAACTTCCTAGAACCGTTGTTTGTAAATTACACCAGGGATCAATTGTGACAAGTATGGATTTTCATCCCTTCATTCATTCTACACTTGTGGTTGGAAGTTCAAATGGTGAAATTTCACTTTGGGATGCAAGGCTGAAAGAGAGGCTGATATCTAAGTCTTTCAAAATATGGGATTTTTCTAAAAGCTCGGTCAAATTTCAGGGTGCGAATTTGAAAAAATCGCCAATATCTATCAATCATGTATCATGGAGCCCGGAAGCGAGTTTTATTGGTGTTGCTTTTGCAAAACATTTGATTCATTTGTATAGCTATCAATTTCCTAATGGCCTATACCAGCATTTGGAGATTGATGCTCATGATGGTGGTGTTAATGACTTAGCTTTTTCAAATCCAAAATATCAGCTACGCATTATAACTTGTGGAGATGATAAGTTAATTAAGGTATGGGATTTGGATGGACGTAAGATCTTTACCTTTGAAGGTCATGTAGCACCTGTTTATTCGGTTCTCCCTTGCATGAAGGAAAATGTTGAGATTTTATTTTCAACTTCGGTTGATGGAAAAATTATGGCCTGGTTCTATGACCGGAAGAACAACCAACTGAATTACGACACTCCCGGAAAGTGTTGCACCACACTACTCTATAGTGCTGATGGAACTAGATTGTTTTCTTGTGGGACAAGTAAAGATGGAGATTGTTTCATAGTCGAGTGGAATGACGCTGAAGGTGAAGTAATAAGAACATATTCTGGATTTAGAAACCGTTCTGCGGGTATTGTGCAATTCGACACTGCAAAGAATCGATTTTTGGCTGCTGGTATAGACAGCCATATTAAATTTTGGCATGTCGATAGAGTCAATGTTCTGACTAGTACAGATGCTGACGGTGGTCTTCCTAGTCTACCTCGCTTGAGGTTCAATAAGGAAGGAAATATGCTTGCTGTTACTACAACAGATGGTGGTTTTAAAGTCCTTGCTAACGCCGATGGTATCAAATACTTAAGTGGAATTGAAGCACCTAGAGAACCATCCAATGAACCGGTTGACACAAAGTATCGAATAGTTACTGTGCCGGACAGTATGGGACCGAGTAACAAGGTTATTCGTCTTCTTTACACAAATCATGGAACTGGTCTTCTAGCTCTTGGTTCAAAAGGGATTCAGAAGATGTGGAAATGGAGCCCTAGTGAATCAAATCCTACTGGAAAGGCGACGACGCGTTACATTCCTAAACATTGGACACCGAATAATGGTACTCCAATGACTAATGATGTTCCCCAAAATTGTGATTCGGCGATTCCCTGCGTTGACATTTCAAAAAATGATCTCTATGTCATTGCTTCATGTGGAGGACGAGTTGCATTGTTCGACATGGAGTTGTTTAAAGTAATATGTCATCTAATGCGACGCCTGACAGCTACAACATTTCTTGCGTTTAATCCTAAAAACAATAACATGCTCGCTGCTGGAATGGAAAATTCTGATATTCATATTTATAATCATAATTTTAGATGCTTTGTGGTTAATCATACATTGAAGGGTCACAACAAGTACATAACTGGTTTAGCTTTTTCACTTCGATTGAATATGATGGTTTCCTCTGGTGCTGATGCTCAGCTTATCTCTTGGTGCACAAAGACATGGCATAAGAAGAAGAGACCAGTGTCAATCCAAATGCAAGGTGGTGGAAATGCACCTGAAGGTGAGACGAAAGTTCAGTTTCACATTGATGAACTGAAGTTGTTGGTATGCCATGAGACTCAATTAGCAATATATGATGCTTCAAAAATGCAATTGATTCACCAGTGGCTGCCACAACAAGATGGATTGTCTGGTGCTATATCTTCAGCAGCATACTCATGTAATGGCAAACTAGTTTATTCTAGTTTTACTAATGGAGACATTGGAGTATTTGATGCCGAAACCCTCCAACTACGATATCGTATGGATTCATCTGCATACCTGGATTATACTCCACCCAACAGCCAAAATGTTTACCCTCTTGTTGTCACAGCACATCCACAAGAGCCATATCAATTTGCAATTGGACTGTCAGATGGGTCTGTTAAGGTTATAGAGCCCACTGACACTGCAGGATGGTGGAGAAATAATCTGGATACGATGTAA 2970 0.399 MASLDKEIVLIILQFLEEENLKETMHKLEQESGLFFNFKYFEEKIFAGDWDECEKYLNGFTKLNENRHSMNMFFEIRKQKYFEALDRHDKAAAVEILVNDLKIFSTFNEGLYKELANLITLGNIRENQQLSKFGDTRSSRILLTIELKKFIDINPSFKNKLRFPSLNSSRLRRLINQSLNWQHKLCGNPKENPNIKSLLTDHTCSPCRSGTRTPTLALLPAAPLPSAPADPSANVVAAQMVNGNPSSSYQSLAAFAASSLPGPSDRVTNTCTPQPAPRLFDELPRTVVCKLHQGSIVTSMDFHPFIHSTLVVGSSNGEISLWDARLKERLISKSFKIWDFSKSSVKFQGANLKKSPISINHVSWSPEASFIGVAFAKHLIHLYSYQFPNGLYQHLEIDAHDGGVNDLAFSNPKYQLRIITCGDDKLIKVWDLDGRKIFTFEGHVAPVYSVLPCMKENVEILFSTSVDGKIMAWFYDRKNNQLNYDTPGKCCTTLLYSADGTRLFSCGTSKDGDCFIVEWNDAEGEVIRTYSGFRNRSAGIVQFDTAKNRFLAAGIDSHIKFWHVDRVNVLTSTDADGGLPSLPRLRFNKEGNMLAVTTTDGGFKVLANADGIKYLSGIEAPREPSNEPVDTKYRIVTVPDSMGPSNKVIRLLYTNHGTGLLALGSKGIQKMWKWSPSESNPTGKATTRYIPKHWTPNNGTPMTNDVPQNCDSAIPCVDISKNDLYVIASCGGRVALFDMELFKVICHLMRRLTATTFLAFNPKNNNMLAAGMENSDIHIYNHNFRCFVVNHTLKGHNKYITGLAFSLRLNMMVSSGADAQLISWCTKTWHKKKRPVSIQMQGGGNAPEGETKVQFHIDELKLLVCHETQLAIYDASKMQLIHQWLPQQDGLSGAISSAAYSCNGKLVYSSFTNGDIGVFDAETLQLRYRMDSSAYLDYTPPNSQNVYPLVVTAHPQEPYQFAIGLSDGSVKVIEPTDTAGWWRNNLDTM* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3705 989 Gene3D - 623 841 IPR015943 GO:0005515
Mal4g3705 989 SUPERFAMILY WD40 repeat-like 707 975 IPR036322 GO:0005515
Mal4g3705 989 Pfam LisH-like dimerisation domain 6 33 - -
Mal4g3705 989 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 35 92 IPR006595 -
Mal4g3705 989 Gene3D - 842 979 IPR015943 GO:0005515
Mal4g3705 989 SMART ctlh 34 92 IPR006595 -
Mal4g3705 989 Coils Coil 986 989 - -
Mal4g3705 989 ProSitePatterns Trp-Asp (WD) repeats signature. 418 432 IPR019775 -
Mal4g3705 989 Gene3D - 363 616 IPR015943 GO:0005515
Mal4g3705 989 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 433 IPR001680 GO:0005515
Mal4g3705 989 Gene3D - 266 362 IPR015943 GO:0005515
Mal4g3705 989 SMART WD40_4 284 323 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 703 738 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 940 974 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 877 920 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 523 563 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 390 431 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 786 825 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 745 781 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 341 384 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 477 520 IPR001680 GO:0005515
Mal4g3705 989 SMART WD40_4 433 474 IPR001680 GO:0005515
Mal4g3705 989 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 265 622 - -
Mal4g3705 989 SUPERFAMILY WD40 repeat-like 290 605 IPR036322 GO:0005515
Mal4g3705 989 Pfam WD domain, G-beta repeat 397 431 IPR001680 GO:0005515
Mal4g3705 989 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 265 622 IPR027728 GO:0006355
Mal4g3705 989 MobiDBLite consensus disorder prediction 674 703 - -
Mal4g3705 989 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 631 985 - -
Mal4g3705 989 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 1 264 - -
Mal4g3705 989 ProSiteProfiles Trp-Asp (WD) repeats profile. 793 824 IPR001680 GO:0005515
Mal4g3705 989 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 631 985 IPR027728 GO:0006355
Mal4g3705 989 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 264 IPR027728 GO:0006355
Mal4g3705 989 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 433 - -
Mal4g3705 989 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Mal4g3705 989 SMART Lish 4 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3705 Mal-Chr4 109249780 109256825 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3705 - - mtr:MTR_2g435440 1242.25