Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3511 ATGGCAGCATCGTTGGCATGCCTTGTTGGAAGTGGTTTAACTACACAGAGTAATAAAATGGCACTTGACAAGGATGTAAATGGAAGACATCTTTTACTTTCTCGGAGACATTCTTCATCGAGGAGGGCATCAAAAACTATATTAGTAAAGGCATTGTTAGATCAAAGTGAACACAAAGGAAGAAGGGGATTTCTGAAATTGTTGAATGCCACAGTTGGCTTACCCGCATTATTAGGAAGCGCGAAAGCTTATGCTGATGAAGAAGGGGTTTCCTCCTCCATAATGTCTTATTCTAGGTTTCTTGAGTATTTGGACAAGGACAGGGTTAAAAAAGTTGATCTGTACGAAAATGGAACTATAGCTATTGTAGAGGCTGTTTCTCCCGAGTTGGTGGGTAATAGGGTGCAGCGAGTGCGAGTTCAGCTTCCTGGACTTAGCCAAGAACTCCTTCAGAAATTCAGGGAAAAGAACATCGACTTTGCAGCTCATAATGCACAAGAAGAGTCAGATTCCTTCTTTTCAAACTTGATTGGAAATCTGGCTTTCCCTATAATTGTGATTGGAGGACTGTTCCTTCTCTCACGACGGTCATCTGGAGGGACGGGTGGTCCCGGTGGGTCTGGCTTTCCTTTTGCTTTTGGTCAATCGAAAGCCAAATTTCAAATGGAACCAAACACTGGAGTGACATTTGATGATGTTGCCGGGGTAGATGAAGCCAAGCAGGATTTTATGGAGGTAGTGGAGTTTCTAAAAAAGCCTGAGAGGTTCACTGCTATCGGGGCTCGCATACCAAAAGGAGTTCTTCTCATTGGTCCCCCAGGGACCGGGAAGACGCTATTAGCCAAGGCTATTGCCGGCGAAGCAGGAGTCCCGTTTTTCTCAATCTCAGGTTCTGAGTTTGTTGAGATGTTTGTCGGTATCGGTGCTTCTCGAGTTCGCGATTTGTTCAAGAAGGCCAAAGAGAATGCTCCTTGTATTGTTTTTGTCGATGAAATTGATGCCGTGGGAAGGCAGCGAGGCACTGGAATCGGTGGAGGGAATGATGAAAGGGAACAGACCCTCAACCAACTTTTGACAGAAATGGATGGATTTGAGGGTAATACTGGAATCATTGTCATTGCAGCAACCAACAGGGCTGACATTCTTGACTCTGCTTTATTGAGACCGGGGCGGTTTGATAGACAGGTATCAGTTGACGTCCCAGACATTCGGGGAAGGACTGAAATACTAAAGGTTCATGGTAGCAATAAAAAATTTGATGCTGATGTTTCTCTCGAGGTAGTTGCAATGAGAACACCTGGCTTTAGTGGAGCTGATCTTGCAAACCTCTTGAATGAAGCTGCTATATTAGCTGGTCGGCGTGGAAAGGCGGGAATTTCATCAAAAGAGATTGATGATTCTATTGATAGGATTGTTGCTGGAATGGAAGGAACAGTGATGACAGACGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGGCATGCCATTTGCGGAACATTGACTCCGGGTCATGATCCTGTACAAAAGGTAACCCTAGTTCCACGTGGGCAAGCTCGGGGTCTTACTTGGTTCATTCCTTCTGACGACCCAACTCTAATATCCAAACAACAACTCTTGGCAAGAATTGTTGGTGGACTCGGCGGTAGAGCTGCAGAGGAAATTATTTTTGGTGAGCCTGAAGTTACAACTGGAGCGGCTGGTGATTTGCAACAGATAACCAGTTTGGCTAAACAGATGGTAACCACATTTGGAATGTCTGATATTGGTCCTTGGTCACTTATGGACTCGTCTCAAAATGCAGATGTCATCATGAGAATGATGGCAAGAAACTCAATGTCAGAAAAGCTTGCTGAAGACATTGATTCTGCTATCAAGAGGATCTCAGATGAAGCATATGAAATTGCATTGAAGCATATACGGAACAACCGTGAGGCCATGGATAAAATCGTGGAAGTCCTACTGGAAAAGGAGACAATTACTGGAGATGAATTCAGATCTATCCTTTCGGAGTTTGTTGAAATTCCACCCGAAAATATAGTCCCTACTTCAACTCCCTCACCAGTTGTTGTTTGA 2079 0.4425 MAASLACLVGSGLTTQSNKMALDKDVNGRHLLLSRRHSSSRRASKTILVKALLDQSEHKGRRGFLKLLNATVGLPALLGSAKAYADEEGVSSSIMSYSRFLEYLDKDRVKKVDLYENGTIAIVEAVSPELVGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEESDSFFSNLIGNLAFPIIVIGGLFLLSRRSSGGTGGPGGSGFPFAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLIGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVSVDVPDIRGRTEILKVHGSNKKFDADVSLEVVAMRTPGFSGADLANLLNEAAILAGRRGKAGISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICGTLTPGHDPVQKVTLVPRGQARGLTWFIPSDDPTLISKQQLLARIVGGLGGRAAEEIIFGEPEVTTGAAGDLQQITSLAKQMVTTFGMSDIGPWSLMDSSQNADVIMRMMARNSMSEKLAEDIDSAIKRISDEAYEIALKHIRNNREAMDKIVEVLLEKETITGDEFRSILSEFVEIPPENIVPTSTPSPVVV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3511 692 SUPERFAMILY FtsH protease domain-like 482 680 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal4g3511 692 Gene3D - 401 479 - -
Mal4g3511 692 CDD AAA 242 399 - -
Mal4g3511 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 470 IPR027417 -
Mal4g3511 692 SMART AAA_5 263 402 IPR003593 -
Mal4g3511 692 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 2, CHLOROPLASTIC 4 682 - -
Mal4g3511 692 Pfam ATPase family associated with various cellular activities (AAA) 267 398 IPR003959 GO:0005524|GO:0016887
Mal4g3511 692 PANTHER METALLOPROTEASE M41 FTSH 4 682 - -
Mal4g3511 692 Pfam AAA+ lid domain 422 464 IPR041569 -
Mal4g3511 692 Gene3D Peptidase M41 480 675 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal4g3511 692 ProSitePatterns AAA-protein family signature. 370 388 IPR003960 GO:0005524|GO:0016887
Mal4g3511 692 Gene3D - 218 400 IPR027417 -
Mal4g3511 692 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 176 670 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mal4g3511 692 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 18 680 IPR005936 GO:0004176|GO:0004222|GO:0016020
Mal4g3511 692 Pfam Peptidase family M41 481 669 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Mal4g3511 692 Gene3D - 90 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3511 Mal-Chr4 103951114 103954401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3511 221 670 Miscellaneous Gene Families AT5G53170 49.890 3.65e-138 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3511 K03798 - gmx:100795567 1122.84