Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3471 ATGGAACAACCTCCTTCAGATCCTCCGGCCACCGGTGAAACCGTAAGCAAAAATGCATTGAAGCGTGAAATCAAGCTCAGGCAGAAAGAAGAAGAAAGGAGGAAAAAGGAGGAGGAAAAAGCCAAAAGGGCTGCTGAAATGGGAAATGCTAACGCGAACAGACCTGCAAATGCAAATGCTGACGAGGAAGATATGGATCCAACGCAATACTTGGAGAATAGGCTAAAACATCTAGCAACTGAAAAGGAAGAAGGGAGAAACCCTTATCCTCACAAATTCTCTGCCACTACAACGATTAAAAAATACATCAAAGAATATGAAGGTTTAAACGATGGGCAACACCTTGACGATGTTTCTGTGTCTTTGGCTGGCAGAATCATGCACAAACGTGCCTCTGGTGCAAAGCTGGTCTTTTATGACCTTCATGATGATGGTGTTAAGGTTCAGGTTATGGCCGATGCAAGTAAATCGGACTTGAATGAGGCTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGTGATATTGTTGGCATCACAGGGTTTCCAGGCAAAAGCAAGAAGGGTGAGCTTAGTATTTTCCCCAAAACTTTTGTGGTGCTGTCTCATTGTCTGCATATGATGCCAAGACAAAAATCTGCTGCTGCTGCTGCTGATAATGCAAATGTGAAGAAAAATGCATGGGTACCAGGAAATACTAGGAATCCCGAAGCATACATTTTGAAAGATCAGGAAACAAGATATCGGTTACGCCATTTGGATTTGATGCTTAATCCAGAGGTTCGAGAAATATTCAGGACTAGGTCTAAAATCATTTCTTACGTTAGGAGTTTTCTGGACAAGCTTGATTTCTTGGAGGTTGAAACTCCAATGATGAACATGATTGCTGGTGGTGCTGCTGCTCGGCCATTTGTAACTCATCATAATGACCTGAACATGAGGTTATTCATGAGAATTGCACCCGAACTCTACCTCAAGAAGTTGGTTGTTGGTGGGCTGAACCGAGTTTATGAAATTGGGAAACAATTTAGGAATGAGGGCATAGATTTGACTCATAATCCTGAGTTTACCACCTGTGAGTTCTATATGGCTTACGAGGACTACTATTACTTAATGGAGATAACAGAGAACATGTTGAGCGGTATGGTACATGAACTCACAAACGGCAGCTATAAAATCAAGTACCATGCAGATGGACTGGACAAGGATCCTATTGAAATCGACTTTACTCCACCATTCAGAAGGATTGACATGATTGAAGGACTAGAGGAGATGGCAGGCCTCAATATTCCCAAAGACCTGACAAGCGATGAAGCTAATCAATATCTGATGGATGCCTGCTTGAAGTACGAAATCAAATGTCCCCCTCCTGAAACAACTGCTCGTTTGTTGGACAAGCTTGTGGGGCACTTTTTGGAGGAAACATGTGTGAACCCGACATTTATCATAAACCATCCCGAGATAATGAGTCCATTGGCAAAGTGGCACAGATCAAAACCAGGTCTGACTGAACGCTTTGAGTTGTTTATCAACAAACATGAGCTTGCTAACGCGTATACTGAATTGAATGACCCTGTGGTACAACGGCAAAGATTTGCTGCTCAACTCAAGGATCGGCAATCAGGTGATGATGAAGCAATGCCCATTGACGAAACATTTTGCACAGCTTTGGAGTATGGTTTACCACCAACTGCTGGTTGGGGTTTGGGTATTGATCGGTTGACCATGTTATTGACTGATTCACAAAATATCAAGGAGGTTCTTCTCTTCCCTGCCATGAAACCTCAAGATTGA 1794 0.427 MEQPPSDPPATGETVSKNALKREIKLRQKEEERRKKEEEKAKRAAEMGNANANRPANANADEEDMDPTQYLENRLKHLATEKEEGRNPYPHKFSATTTIKKYIKEYEGLNDGQHLDDVSVSLAGRIMHKRASGAKLVFYDLHDDGVKVQVMADASKSDLNEAEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRQKSAAAAADNANVKKNAWVPGNTRNPEAYILKDQETRYRLRHLDLMLNPEVREIFRTRSKIISYVRSFLDKLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLFMRIAPELYLKKLVVGGLNRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYEDYYYLMEITENMLSGMVHELTNGSYKIKYHADGLDKDPIEIDFTPPFRRIDMIEGLEEMAGLNIPKDLTSDEANQYLMDACLKYEIKCPPPETTARLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKWHRSKPGLTERFELFINKHELANAYTELNDPVVQRQRFAAQLKDRQSGDDEAMPIDETFCTALEYGLPPTAGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3471 597 PANTHER LYSINE--TRNA LIGASE 13 597 - -
Mal4g3471 597 CDD LysRS_N 119 255 IPR044136 GO:0000166
Mal4g3471 597 MobiDBLite consensus disorder prediction 18 45 - -
Mal4g3471 597 Pfam OB-fold nucleic acid binding domain 120 197 IPR004365 GO:0003676
Mal4g3471 597 Hamap Lysine--tRNA ligase [lysS]. 73 596 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mal4g3471 597 PIRSF LysRS2 8 597 IPR034762 GO:0004824|GO:0005524|GO:0006430
Mal4g3471 597 Pfam tRNA synthetases class II (D, K and N) 243 593 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Mal4g3471 597 Gene3D - 68 210 IPR012340 -
Mal4g3471 597 CDD LysRS_core 258 595 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 Gene3D Bira Bifunctional Protein; Domain 2 239 597 IPR045864 -
Mal4g3471 597 SUPERFAMILY Class II aaRS and biotin synthetases 243 594 IPR045864 -
Mal4g3471 597 TIGRFAM lysS_bact: lysine--tRNA ligase 235 596 IPR002313 GO:0004824|GO:0005524|GO:0006430
Mal4g3471 597 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 265 595 IPR006195 -
Mal4g3471 597 PRINTS Lysyl-tRNA synthetase signature 296 312 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 PRINTS Lysyl-tRNA synthetase signature 478 494 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 PRINTS Lysyl-tRNA synthetase signature 280 290 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 PRINTS Lysyl-tRNA synthetase signature 325 338 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 PRINTS Lysyl-tRNA synthetase signature 343 360 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Mal4g3471 597 MobiDBLite consensus disorder prediction 1 64 - -
Mal4g3471 597 Coils Coil 19 47 - -
Mal4g3471 597 SUPERFAMILY Nucleic acid-binding proteins 65 209 IPR012340 -
Mal4g3471 597 PANTHER LYSYL-TRNA SYNTHETASE 13 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3471 Mal-Chr4 102360676 102369045 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3471 K04567 - gmx:100785660 1005.36