Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3459 ATGGCAACAGAGAGTCCAATTAGAATTGCAGAAGCTGGTGGGAAATGGCCTTCTCATATGGAAGCTTCAGCTTATGGCACACCGCCTCGTAACATGGGGGCAGAGGATCTGGGTGTACTGTTGAAGGGCCATAGGTTCCGTGGTAGTGGAAAGGATGCTGCACCCAATCGTAGTGGCAGTGCACCTCCCAGCATGGAGGGCTCATTTCTCGCCATAGAAAACCTATTGCCGCTGCAGAACGCCCAGGATGCAAGCTTGACAACTCTGAGCAGAGCTGTGAAAAATTGTGAATCTGAAGAACAGTTACGAGCTGATCCAGCTTATTTGGCATATTACAGTTCCAATGTCAACCTAAACCATAGACTTCCTCCCCCACTAACATCCTGGGAAAACCGCCATATAGGGCATCATATTGGTAGTTCTAGAAATAATTGGGGACTGTCTTCTGCAGATCATAGAAGTAAAAGTTCTTTACATTTATCGCAAGCAACTCTATCAACACACAAGGAGGAGTCTGAGGAGGATTCACCTCAACAACAGGCTTATGAAAATGAATTAGTTAATACAAGTGGAGTATGGCGTAGACAGGATGCAGCTTCATTGGCATCACAGCAAAAGAACGTGGTTGATTTAATTCAGGAGGATTTTCCTCGCACCATGTCACCTGTATATAATATGTCTCTTTCTGCAAGTCATGGAATGGTGGACAAACCAATTGAAGTAGAAGCTGGTCCCAGTTCTTCTCGTGACCCTCATGTTACTGCAGTAGAGTCTGCTAAACCTACTGCGGGTGCGGATGATATTAGGGTGTCATCAAGTGTTGATGTCCACTCCCCTGTTGCAAGCTCGTCAACATTTGAATCCACAGCTAGCATGGGTTTTAGTAACTTAGATGTTGCAACTGTTGCATCTCAATTGAAGACACTTAATGTATCTAATCTACAAAATTCTGAAAGCCTGAGTTACCAGAACAATATGATGCAACGTCAGGTATTCCCGCAACAAAGCAATCCGTATGAAGTTCCTGGTGCCAATTCTCAAAGTGTAAACCCTGCCTACGTTGGCAGGGAACAGTTTCCTCATAATTCAAGCAAGTTGTCTGATGTCCAGCCACTACTTCAGTCATCGGGGTTTACACCTCCCTTATATGCCACAGCAGCAGCTTATATGGCCTCTGTAAATCCATTTTACACTAATATGCAGGCCTCAGGCACATATGCTCCTCAATATGTTGGTGGATACACTTTAAATCCCACAGCTATCCATCCATATATTTCTGCATACCCTCCTCATGGTGCTGTACCATTTGTTGTTGATGGGGCTACTAGTTCTAGCTATACCCCGCTAACACCAGGGGTTTCGACCGGGGGTAATATTTCGCATGGAGCTGAAATGGTACATGCAAACAAGTACCTTGGGCAATATGGATTCCCTGTACAGCCTTCTTTTGGTGATCCTGTTTACATGCAATATAATCAGCAACCTTTTGTGGAGGGATTTGGTATTTCTGGTCATTTTGATCCGCTGGCACCTAGAGCAAGTGTTGTTAACCAAATAAATCCTTATGATTCACAAAAAAGGCCTGGTACTGGTGCTTATTTGGATGATAAAAAATTACATGAACAGAGAACTGGTGCTAATATGAGCTCAAGAAGAGGTGGATTATCGGTTCCTAGTTATTTTGGACATATGCCAAATACGGGCTATGTAATGCAGTATCCAACTTCACCTCTTCCCCGTCCAGTTTTGTCTGGATATCCAGAAGGAAGTCCTGGCCTTGCAGGAAGTAGAAATGAAATGATGCCTTCCCCAGCTTCTGGTAGAAATGGAAGCATGTTATCTGGATGGTATGGTCCAAGATCCTTTGACAGTGCTCAAGACCCCAAGATTGTTAACTTCCTTGAAGAGTTGAAATCTGGCAAAGGTCGCAGATTTGAGCTATCCGATGTTATTGGACATATTGTTGAGTTCAGTGCTGATCAGCATGGAAGTCGATTTATACAACAAAAGTTGGAAAGCTGCGGTGTCGAAGAGAAGGCATTGGTGTTCAAGGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTCGGTAACTATGTAATACAAAAGTTTTTTGAGTATGGAAACCCTGAGCAGAGAAGGGAACTTGCAGATAAACTGTCTGGTCAGATACTGCCTTTGAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTCGAGGTTATTGAGCATGAACAGAAAGCTCAGCTTGTTCGTGAGCTAGATGGAAATATCATGAGATGTGTTCGTGATCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAAAATTGGCTTTATACTATCTGCATTCCGTGGTCAAGTTGCTAATTTATCAATGCATCCTTATGGTTGTCGAGTCATCCAGAGAATTCTAGAGCATTGCACTGACGAGGTTCAGTGCCAGTTTATCGTGGATGAAATCTTGGAGGCAGTTTGTTCTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTGTTGGAGAGAGGTAGACCTCAAGAAAGGAGCCAAATTATCAGCAAGTTGTCAGGACATGTTGTTCAATTAAGCCAGCATAAGTTTGCTTCGAATGTTGTGGAGAAATGTCTGGAGTATGGTGATGCCTCTGAACGGGAAGTGTTAATTGCAGAGATTATGGCGCATGATGAGCAAAATGATAACTTATTGACAATGATGAAAGACCAATTTGCGAATTATGTGATCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGCAAGGTTACTTTCACACATAAGAGTTCATGCTAATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGTTTGGAACATCAATTTGGAGAGAATCAAGCACCCAGTTCATGA 2934 0.4281 MATESPIRIAEAGGKWPSHMEASAYGTPPRNMGAEDLGVLLKGHRFRGSGKDAAPNRSGSAPPSMEGSFLAIENLLPLQNAQDASLTTLSRAVKNCESEEQLRADPAYLAYYSSNVNLNHRLPPPLTSWENRHIGHHIGSSRNNWGLSSADHRSKSSLHLSQATLSTHKEESEEDSPQQQAYENELVNTSGVWRRQDAASLASQQKNVVDLIQEDFPRTMSPVYNMSLSASHGMVDKPIEVEAGPSSSRDPHVTAVESAKPTAGADDIRVSSSVDVHSPVASSSTFESTASMGFSNLDVATVASQLKTLNVSNLQNSESLSYQNNMMQRQVFPQQSNPYEVPGANSQSVNPAYVGREQFPHNSSKLSDVQPLLQSSGFTPPLYATAAAYMASVNPFYTNMQASGTYAPQYVGGYTLNPTAIHPYISAYPPHGAVPFVVDGATSSSYTPLTPGVSTGGNISHGAEMVHANKYLGQYGFPVQPSFGDPVYMQYNQQPFVEGFGISGHFDPLAPRASVVNQINPYDSQKRPGTGAYLDDKKLHEQRTGANMSSRRGGLSVPSYFGHMPNTGYVMQYPTSPLPRPVLSGYPEGSPGLAGSRNEMMPSPASGRNGSMLSGWYGPRSFDSAQDPKIVNFLEELKSGKGRRFELSDVIGHIVEFSADQHGSRFIQQKLESCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGNPEQRRELADKLSGQILPLSLQMYGCRVIQKALEVIEHEQKAQLVRELDGNIMRCVRDQNGNHVIQKCIESIPTKKIGFILSAFRGQVANLSMHPYGCRVIQRILEHCTDEVQCQFIVDEILEAVCSLAQDQYGNYVTQHVLERGRPQERSQIISKLSGHVVQLSQHKFASNVVEKCLEYGDASEREVLIAEIMAHDEQNDNLLTMMKDQFANYVIQKVIDICSENQRARLLSHIRVHANALKKYTYGKHIVARLEHQFGENQAPSS* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 793 829 IPR001313 GO:0003723
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 757 792 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 685 720 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 830 865 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 649 684 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 866 901 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 908 943 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 721 756 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 757 792 IPR001313 GO:0003723
Mal4g3459 977 SMART pum_5 793 829 IPR001313 GO:0003723
Mal4g3459 977 SUPERFAMILY ARM repeat 635 966 IPR016024 -
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 649 684 IPR001313 GO:0003723
Mal4g3459 977 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 970 - -
Mal4g3459 977 MobiDBLite consensus disorder prediction 46 66 - -
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 721 756 IPR001313 GO:0003723
Mal4g3459 977 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 629 969 IPR033133 GO:0003723
Mal4g3459 977 CDD Pumilio 644 965 IPR033712 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 912 945 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 835 867 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 725 758 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 768 783 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 653 687 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 797 832 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 690 722 IPR001313 GO:0003723
Mal4g3459 977 Pfam Pumilio-family RNA binding repeat 870 904 IPR001313 GO:0003723
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 685 720 IPR001313 GO:0003723
Mal4g3459 977 MobiDBLite consensus disorder prediction 145 165 - -
Mal4g3459 977 MobiDBLite consensus disorder prediction 145 180 - -
Mal4g3459 977 MobiDBLite consensus disorder prediction 1 31 - -
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 830 865 IPR001313 GO:0003723
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 866 901 IPR001313 GO:0003723
Mal4g3459 977 ProSiteProfiles Pumilio RNA-binding repeat profile. 902 943 IPR001313 GO:0003723
Mal4g3459 977 PANTHER PUMILIO HOMOLOG 5 45 970 - -
Mal4g3459 977 MobiDBLite consensus disorder prediction 243 266 - -
Mal4g3459 977 Gene3D - 630 974 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3459 Mal-Chr4 101814930 101823344 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3459 K17943 - gmx:100811036 1627.45