Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g3338 ATGGAGACACCACCATCATCGGGCGTGGCGAAGAAGAAGGAAACACGAGGTCGAAAACCTAAGCCAAAGGAAGACAAGAAAGAGGAACAATCACAACAACAAGCACAAGTGAAGACACCAAAAGAATCGAAGAAGATTCACCAACAGAATCAACAGCAGCATCAACAACAACAAGCTTCTGTTGATGAGAAATACACTCAATGGAAATCTCTTGTTCCTGTTCTTTATGATTGGCTCGCTAATCATAACCTCGTTTGGCCTTCTCTCTCTTGCAGGTGGGGTCCTCAGCTTGAACAGGCTACATACAAGAATCGTCAGAGGCTTTATCTTTCGGAGCAGACTGATGGGAGTGTTCCGAATACGCTGGTGATTGCAAATTGTGAGGTTGTGAAGACTAGGGTTGCAGCTGCGGAACACATTTCACAGTTTAATGAAGAGGCTCGCTCTCCATTTGTGAAGAAGTACAAGACCATCATCCATCCAGGCGAGGTGAACAGAATCAGGGAATTGCCACAAAATTCTAAGATTGTGGCCACTCACACAGACAGCCCTGATGTTCTCATCTGGGACGTTGAAAGTCAACCTAACCGTCATGCTGTCCTTGGAGCCACAAACTCTCGTCCAGATTTGATATTGACTGGACACCAAGACAATGCTGAATTTGCTCTTGCAATGTGCCCAACTGAGCCTTATGTGCTTTCTGGAGGAAAAGACAAAACAGTGGTGTTGTGGAGTATTCAAGACCATGTAACATCTGCTGCTACAGACTCCAAGTCTGGTGGATCCATTGGCAAAACTGTTGAAAGCCCTTCTGTCGGACCAAGAGGTATCTACTCTGGGCATGAGGATACTGTTGAAGATGTGGCTTTTTGCCCTTCTAGTGCGCAGGAGTTCTGTAGTGTTGGAGACGATTCTTGTCTCATATTTTGGGATGCACGTATCGGCACTAGTCCTGTGGTCAAGGTTGAAAAAGCTCACAATGCTGATCTTCACTGTGTTGACTGGAATCCCCATAATGATAATCTGATTCTTACTGGGTCGGCAGATAATTCTGTTCGCATGTTCGATCGCCGCAATCTCACCTCTAATGGGGTTGGGTCTCCTATCCATACATTTGAGGCTCATAAAGCTGCCGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGAAGCTCAGCAGAAGATGGTCTCTTAAACATTTGGGATCATGAGAAGGTTGGTAAAAAGATTGAGCGAGGTGGAAAAACAATAAATTCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGACAAAGTTGTTGACTTCCACTGGAATGCATATGATCCATGGACACTTGTTAGCGTGTCTGATGATTGTGAAAGTACTGGTGGAGGAGGAACATTGCAGATATGGCGCATGAGCGATTTGCTCTACAGACCAGAGAATGAGGTTTTGGAAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCTTGTGCAGCAAAGACCGAAAAATAA 1509 0.45 METPPSSGVAKKKETRGRKPKPKEDKKEEQSQQQAQVKTPKESKKIHQQNQQQHQQQQASVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKTRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVESQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIQDHVTSAATDSKSGGSIGKTVESPSVGPRGIYSGHEDTVEDVAFCPSSAQEFCSVGDDSCLIFWDARIGTSPVVKVEKAHNADLHCVDWNPHNDNLILTGSADNSVRMFDRRNLTSNGVGSPIHTFEAHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDHEKVGKKIERGGKTINSPPGLFFQHAGHRDKVVDFHWNAYDPWTLVSVSDDCESTGGGGTLQIWRMSDLLYRPENEVLEELEKFKSHVVACAAKTEK* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g3338 502 MobiDBLite consensus disorder prediction 254 278 - -
Mal4g3338 502 SMART WD40_4 205 245 IPR001680 GO:0005515
Mal4g3338 502 SMART WD40_4 271 311 IPR001680 GO:0005515
Mal4g3338 502 SMART WD40_4 316 356 IPR001680 GO:0005515
Mal4g3338 502 SMART WD40_4 365 405 IPR001680 GO:0005515
Mal4g3338 502 SMART WD40_4 423 470 IPR001680 GO:0005515
Mal4g3338 502 SMART WD40_4 151 190 IPR001680 GO:0005515
Mal4g3338 502 MobiDBLite consensus disorder prediction 7 32 - -
Mal4g3338 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 405 - -
Mal4g3338 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 356 IPR001680 GO:0005515
Mal4g3338 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 311 IPR001680 GO:0005515
Mal4g3338 502 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 405 IPR001680 GO:0005515
Mal4g3338 502 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 63 129 IPR022052 -
Mal4g3338 502 MobiDBLite consensus disorder prediction 1 58 - -
Mal4g3338 502 PANTHER WD-40 REPEAT-CONTAINING PROTEIN MSI4 43 499 - -
Mal4g3338 502 Pfam WD domain, G-beta repeat 324 356 IPR001680 GO:0005515
Mal4g3338 502 Pfam WD domain, G-beta repeat 276 311 IPR001680 GO:0005515
Mal4g3338 502 Pfam WD domain, G-beta repeat 366 405 IPR001680 GO:0005515
Mal4g3338 502 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Mal4g3338 502 PANTHER WD40 REPEAT FAMILY 43 499 - -
Mal4g3338 502 SUPERFAMILY WD40 repeat-like 150 495 IPR036322 GO:0005515
Mal4g3338 502 Gene3D - 18 488 IPR015943 GO:0005515
Mal4g3338 502 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g3338 Mal-Chr4 97646417 97652755 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g3338 232 465 Miscellaneous Gene Families AT5G08390 25.000 6.17e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g3338 K10752 - gmx:100779302 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g3338 4 97646417 97652755 Mal4g3338 4 97646417 97652755 ECH