LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal4g1552	ATGGCAACAATTAACAAGATGGAAAAAATGGCATCAATTGATGCACAGCTTAGGCAATTGGTTCCAGCAAAAGTCAGTGAAGATGATAAACTTATTGAGTATGATGCTCTTTTGCTGGATCGGTTTCTTGATATTCTTCAAGATTTACATGGAGAAGATCTGAAAGACTCTGTTCAAGAAGTGTATGAGCTTTCTGCTGAATATGAAAGAAAGCATGATCCTAAGAAACTTGAAGAACTTGGAAATTTGATAACAAGTTTCGATGCAGGAGACTCAATTGTTGTCGCCAAGTCCTTTTCACACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTTCAGATTGCGCACCGCCGAAGGAACAAGTTGAAGAAAGGTGATTTTAGGGATGAGAGCAATGCAACTACAGAATCAGACATTGAGGAAACTCTCAAGAAACTTGTGTTTGACATGAAGAAATCTCCTCAGGAAGTTTTTGATGCATTGAAGAACCAGACCGTTGATCTTGTTCTTACTGCTCATCCTACTCAGTCGGTTCGTCGATCTTTGCTTCAAAAGCATGGAAGGGTAAGGAACTGTTTATCTCAATTGTATGCTAAAGACATCACTCCTGATGATAAGCAGGAGCTTGATGAAGCTCTCCAGAGGGAGATTCAAGCTGCATTCCGTACCGACGAAATCAAGAGGACTCCACCAACACCACAAGATGAGATGAGAGCTGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTCCCTAAATTTCTTCGCCGTGTTGATACGGCATTGAAGAACATAGGGATAAACGAACGTGTTCCCTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGTGACGGTAATCCTAGAGTGACTCCTGAAGTGACAAGGGATGTTTGCTTACTAGCTAGAATGATGGCTGCTAATTTGTATTATTCACAGATAGAAGATCTTATGTTCGAACTTTCTATGTGGCGTTGCAACGATGAGCTACGTGTTCGTGCAGAAGAACTTCACGGGAATTCCAAGAAAGATGAAGTTGCTAAACACTATATAGAGTTTTGGAAAAAAATTCCTTTGAATGAACCGTACCGCGTTATACTCGGTGAGGTAAGGGACAAGCTCTACCGTACTCGTGAGCGTTCTCGCTATCTCCTAGCTCATGGCTATTCTGAAATTCCTGAAGAAGCCACATTCACCAATGTTGATGAGTTTCTGGAACCTCTTGAACTCTGCTACAGATCACTCTGTGCTTGTGGTGATCGTGCAATTGCCGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTTTCCACTTTCGGACTGTCACTTGTAAGGCTTGATATAAGGCAAGAGTCGGATCGTCACAGTGACGTGATGGATGCCATTACCAAACATTTGGAAATTGGATCCTACCTAGAATGGTCTGAAGAAAAAAGACAGGAATGGCTTTTGTCTGAGTTGAGTGGCAAAAGGCCACTTTTTGGACCTGACCTACCCCAAACTGATGAAATTAGAGATGTTTTAGACACGTTTCGTGTCATAGCAGAACTTCCATCTGACAACTTTGGAGCGTATATCATTTCGATGGCAACATCACCGTCTGATGTGCTGGCAGTTGAACTTCTTCAACGCGAATGCAAAGTCAAGAATCCATTAAGAGTCGTTCCATTGTTTGAGAAGCTTGATGATCTTGAGTCTGCTCCTGCTGCATTGGCTCGGTTGTTCTCGATAGACTGGTACATAAACCGAATCGATGGGAAGCAAGAAGTTATGATTGGATATTCTGATTCAGGAAAAGATGCTGGAAGGTTTTCTGCGGCATGGCAGCTATATAAGGCTCAGGAGGACCTCATCAAAGTCGCGCAGAAATTCGGTGTTAAGCTAACCATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATCTTGTCTCAACCTCCAGAGACAATTCATGGATCACTTCGTGTGACGGTTCAAGGTGAAGTAATTGAACAGTCGTTTGGAGAGGAGCACTTGTGCTTTAGAACACTACAACGTTTTACTGCTGCCACTCTAGAACACGGAATGCGTCCCCCAAGTTCTCCAAAACCGGAATGGCGCGCCTTGATGGATCAGATGGCTGTCATTGCTACCGAGGAGTACCGTTCAATTGTGTTCAAGGAACCACGTTTTGTTGAGTATTTCCGTCTGGCTACACCAGAGATGGAGTATGGCAGGATGAACATTGGAAGTCGACCAGCAAAGAGAAGGCCTAGTGGAGGCATCGAAACACTGCGTGCGATACCATGGATCTTTGCATGGACACAGACAAGGTTTCATCTTCCAGTATGGCTAGGATTTGGAGCAGCATTTAAACAAGTTGTTGAGAAGGATGTTAAGAATCTCCATGTGCTGCAAGATATGTACAACCAATGGCCTTTCTTTAGGGTTACAATTGATTTAGTTGAAATGGTGTTTGCCAAGGGAGACCCTGGAATTGCAGCACTAAATGATAGGCTCCTAGTTTCAAAGGATCTGTGGCCATTTGGGGAACAGTTGAGGAGCAAATATGAAGAAACTAAGAAACTCTTACTTCAGGTGGCTGCACACAAGGAAGTTCTTGAAGGAGATCCCTACTTGAAGCAAAGACTCAGGCTGCGTGATTCTTACATTACAACCCTTAATGTTTTCCAAGCTTACACATTGAAACGGATCCGCGATCCAAACTACAAAGTGGAGGCGCGTCCACACATATCGAAAGAGTCCGCTGAAACAAGCAAATCAGCTGATGAACTTGTCACATTGAATCCAACAAGTGAGTATGCTCCTGGTTTGGAAGACACACTCATTCTTACCATGAAGGGTATTGCTGCTGGCATGCAGAACACCGGTTAA	2907	0.4358	MATINKMEKMASIDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDSVQEVYELSAEYERKHDPKKLEELGNLITSFDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFRDESNATTESDIEETLKKLVFDMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRVRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRAEELHGNSKKDEVAKHYIEFWKKIPLNEPYRVILGEVRDKLYRTRERSRYLLAHGYSEIPEEATFTNVDEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHSDVMDAITKHLEIGSYLEWSEEKRQEWLLSELSGKRPLFGPDLPQTDEIRDVLDTFRVIAELPSDNFGAYIISMATSPSDVLAVELLQRECKVKNPLRVVPLFEKLDDLESAPAALARLFSIDWYINRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLIKVAQKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPEWRALMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVVEKDVKNLHVLQDMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGEQLRSKYEETKKLLLQVAAHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYKVEARPHISKESAETSKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*	969

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal4g1552	968	Gene3D	Phosphoenolpyruvate/pyruvate domain	309	446	-	-
	Mal4g1552	968	Hamap	Phosphoenolpyruvate carboxylase [ppc].	24	968	IPR022805	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	5	968	-	-
	Mal4g1552	968	Pfam	Phosphoenolpyruvate carboxylase	36	968	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	169	180	IPR018129	-
	Mal4g1552	968	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	34	968	IPR015813	GO:0003824
	Mal4g1552	968	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	594	606	IPR033129	-
	Mal4g1552	968	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	5	968	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	221	237	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	281	296	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	443	463	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	634	663	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	168	181	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	766	792	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	PRINTS	Phosphoenolpyruvate carboxylase signature	592	612	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Mal4g1552	968	Coils	Coil	105	125	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal4g1552	Mal-Chr4	24910963	24916090	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal4g1552	K01595		-	gmx:100805069	1781.53

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal4g1552	4	24910963	24916090	Mal4g1552	4	24910963	24916090	ECH