Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g1435 ATGTCATTCCTAATCCTATTCCGTCTAGTCTTACCACTCAGCCAGCGCAACATCCTCATCTCCTCCATTGTCCATGATGTGATTGACATTGACAACGACGGCGACGATGATGATGATTTAATGGTACTTGATGAAATAACTCGTAAACGTAAAAAGGGGAAGGCACTTGAAGCCATTCATGAGGACGTGATTGGTAAAACCAGTGTTCTCAAATCTGCCAGAGCTGGACGTAATAGAGCAGCTGTGGTTCCCCCAGGTTTGACAATCACTGATGAACCCGAAAATGAAACTCTGAGGAAACTTCAAAGTTTTAAGCAATTTGACGCTGTCGCGGACATTTCAGACCATTACTTTATTAAAGATAATTCCTCCATGAAGCAGAATCCAAAGAGTTGGGCTAAGAAAATCCAGGAAGAGTGGAAGATTTTGGAGGAGCATTTGCCGGATACAATATTTGTGAGAGATTACGAATCAAGGATGGATCTCATGAGAGCTGTGATCATTGGAGCACAAGGGACTCCTTACCATGATGGTCTTTTCTTTTTTGATGTTTACTTTCCCCCTAGATATCCCAATGTACCCCCGAAAGTCCACTACCACTCTGGAGGTCTTCGGCTCAACCCTAATTTGTATGGTTGTGGCAAAGTATGCCTCAGTCTACTTAACACCTGGTCTGGCAGCAAGAATCAAAAATGGACTCCAGGTGTTTCGACAATGCTACAGGTTCTAGTCTCCATACAAGGTCTAATCTTGAATGCAAAGCCTTACTTCAATGAACCTGGTTCGAAGGGCACACCGGGTGTTGAAGCGAGTTCCCTGCGGTATAATGAGGATACATTCATTCTATCGCTGAAGACAATGATGTATATGATAAGAAAGCCTCCAAAGAATTTTGAAGACCTTGTTATTGGGCATTTCTACAGCCGAGCACATGATATTCTGGCGTCATGTAAAGCATACATGGAAGGTGTTCAAGTTGGTTGTTTGGCGAAAGGTGGGGTTCAAGACGTCGATGAGGGTGAAGGAAAGTGCTCAGATAAATTTAAGGCTGGTTTAGTTGGACATGTGAATAATCTTATCAAAGAGTTTAAAAGAATTGGAGTTAAGGACTATGAGAAATTTACGTCTCCGCCGGTACCACATAGCACCACTGCCAGAAAGTGA 1164 0.4296 MSFLILFRLVLPLSQRNILISSIVHDVIDIDNDGDDDDDLMVLDEITRKRKKGKALEAIHEDVIGKTSVLKSARAGRNRAAVVPPGLTITDEPENETLRKLQSFKQFDAVADISDHYFIKDNSSMKQNPKSWAKKIQEEWKILEEHLPDTIFVRDYESRMDLMRAVIIGAQGTPYHDGLFFFDVYFPPRYPNVPPKVHYHSGGLRLNPNLYGCGKVCLSLLNTWSGSKNQKWTPGVSTMLQVLVSIQGLILNAKPYFNEPGSKGTPGVEASSLRYNEDTFILSLKTMMYMIRKPPKNFEDLVIGHFYSRAHDILASCKAYMEGVQVGCLAKGGVQDVDEGEGKCSDKFKAGLVGHVNNLIKEFKRIGVKDYEKFTSPPVPHSTTARK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g1435 387 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 72 377 - -
Mal4g1435 387 SMART ubc_7 134 288 - -
Mal4g1435 387 SUPERFAMILY UBC-like 122 295 IPR016135 -
Mal4g1435 387 Gene3D Ubiquitin Conjugating Enzyme 90 371 IPR016135 -
Mal4g1435 387 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 20 63 - -
Mal4g1435 387 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 20 63 - -
Mal4g1435 387 CDD UBCc 134 280 IPR000608 -
Mal4g1435 387 Pfam Ubiquitin-conjugating enzyme 136 255 IPR000608 -
Mal4g1435 387 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 72 377 - -
Mal4g1435 387 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 131 288 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g1435 Mal-Chr4 21504154 21507349 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g1435 96 368 Miscellaneous Gene Families AT2G33770 52.518 3.78e-89 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g1435 K10581 - ccaj:109805727 470.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g1435 4 21504154 21507349 Mal4g1435 4 21504154 21507349 ECH