Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0733 ATGAGTGATGAAGGAGAAAGGACTTGTCCTCTCTGCGCTGAAGAGATGGATTTGACTGATCAGCAATTGAGGCCATGCAAATGCGGCTACCAGATTTGTGTCTGGTGTTGGCATCATATAATGGACATGGCTGAGAAGGATGACACAGAGGGACGGTGCCCTGCATGTCGTTCTCCATACGATAAGGAAAAGATTGTCGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAGAAAGATGAAGAGCCAGAAAGCGAAGTCCAAATCATCTGAAGGACGGAAGCAGCTAAGCAATGTGCGAGTTATTCGGCGGAATCTTGTTTACGTAGTGGGATTGCCTCTTGATCTGGCTGATGAAGATCTTCTCCAGCGGCGGGAGTATTTTGGTCAGTATGGAAAGGTCTTAAAAGTGTCAATGTCTCGGACGGCAGCTGGTGTAGTTCAGCAGTTTCCGAACAATACATGTAGTGTATATATTACTTATTCAAAGGAAGAAGAAGCAATTCGATGTATTCAAAATGTACATGGATTTGTTTTGGAAGATAGACCTTTAAGGGCTTGTTTTGGAACAACTAAATACTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCGGATTGTGTATATCTTCATGAGATTGGCTCTCAAGAAGACAGTTTCACAAAAGATGAAGTAGTTTCAGCATACACTAGAAGTCATATTCAACAAATTACTGGTGCTGTAACCAATATGGAACGGCGGTCAGGGAATGTATTGCCTCCTCCTTTGGATGATTGCACGAGCAACATTTCAGGGAAACCTATTGTGAAAAATTCTGCAAGTAACTCTGTAAGCACTGTAAGAGGTTTGCCTCCTAACGGAAGTCCTGCAAAGCCTTTGGCTCCCCATGCTGCATGGGGTTTGCGGGCTACAAATTGTCAGCCTGCTGCTGGCGTTCCAACTGGACTGTCCAAGCCCAAGTCTGATTCAATCAGCAGCACTCTACCCTTTTCCTCGGCTGTTGCAGGCACAGTTCAAGTTTCACTGCATAGTGATACAATAAAGAGGCCATTGTCCAGTGATGGGCGTCATAGTATAATGCCTGGAGCCAAAAATAATTGTATTGATGTCTTGGCGAATGGGGGCGAAAAAACATTGGCTTCTGATGTTTCTCTTGCACCTGTGAATTTGAACACCCAGCTGTCTTCTATACCCTTAGCCAGAGATAGTTGTAGAGGTTGTACAACATCAAACACAACAAAGTCTATTGACATCGCAACAAATTCAATAGGCAGCTTCAGTCCTGGCGAAGCAACTACTGCTACCAACGAGGAGATTCAAGATTTGTCCTATGAGCTGTCCTCTGTTGACCTTGATAGAAATGCTCAAAATGAACATTACAGTATAACCAAACCTAGCAGCCCACCTCCTGATTATGTATTCGTTAAGTCTAAGCAACCTCAAGGATCAGAATATAATAATGTTGACAAATATAGAGACGCAATAATTGCAAATGCAGCCAGTAAAGCCTCTATATCAGATAACGAGGTCTGTAATTCTAAGGAACCATATGATTTGAAATTGGATTCTCAAGCTGAGGTAGCATCGGGTTATGTTGAAGTAGAAGATGATGTGACATCTTTTGATAGTCAAAGACTTAAGGATCCAGAAGTTGTTTGTCATTCTTATTTGCCTAAGTCATCTTTCCCTCGCGTAACAAACCATAATAATCCTCATCCTCTGCCGCATGGTGAACCTTGTACTGTTGTAAATGGTGGTTCTTTAGCCACAGATAATGAAGTTGGGTATGAACCACTATTACATGGATCTAAAGCATTATGCAATGGCTATTCTGAGAAATTGGACAGTACCAGCTCTTACAGGTTGCTTCGTGACGAAAGGAATGATCATCATATTGGAAGATTAATTAGTGAAGCAGTTAATATTGGAAATGATGCTGCTACAGATAAGGGTGAGAGTAGTATAATTTCGAACATTTTGTCCATGGAATTTGATTCCTGGGATGACTCTGTATTATCACCCCATAGTTTGGCCAAGTTGTTAAGTGAAAGCACCGAAAATCAGAACGGTCCGCTGAAGAAATCTAGTTCTTGGAATGTTCAAGCCAATCAATCCAGATTTTCTTTTGCAAGACAAGAGGATTCCAAAATCCAAGCGTTTGATGTTAATCCATCTCATGGTGCCAACCAGCAATTTCTTAGAAGCCACTCACTCATCCAAGATTTTGTAGAAACAACAGATGTATCTTTGGACAAGATCGGTGTTGCAAATGGCTTTCCTTCTACCAATAACATTGATGAATCTGAAAATATAGGCAGTGGTCAATTTGTTGCTTCTTTCAATAAGCCTTCTGCTGTTCCAAAAGCACAAATTTCAGCGCCCCCAGGATTTTCAGCTCCTAGTAGGCCACCACCTCCTGGTTTTTCTTCTCATGAGAGAATGGGACAGGCTTTTGACTCAACTTCTGGGAATTCATTGCTAGACCCTTTCTTGTGGAGAAATTCATATCAGACACCATCAGCTGGAAATTTCGGTGGTGCAGGAGACATTGAGTTTATGGATCCTGCTATTTTGGCTGTTGGTAAGGGGAGGCTTCAAGGTGCGCTAAACGGCCCAATGCTAGACATGCAATCCAATTACTCCCCACAATTAAATTACTTTGAGAATGAGGCCAGACTTCAGTTATTAATGCAAAGATCTCTCTCACCACAACAAAACCATCGATTTTCGGAAATTGGGAACACCTTTTCTCATCTGGGTGATTCTTATGGCATTTCTTCACGAATAGATCAATCACAAGTCAGTAATTTGGCATCATTTCCTCAATTGGCTCTCCAGCAGTCTAGAAATGCCCACTTGCCAAATGGCAATTGGGATGGGTGGAATGAAATGCAGAATGGAAATAGTATGGGTATGGCTGAGCTTTTGAGAAACGAAAGACTTGGGTTTAGTAAGTTTCATAGAGGATATGATGATTCAAAATACCAAATGCCAAATTCTGGGGATCTATACAACAGGACATTTGGGATTTGA 3051 0.4192 MSDEGERTCPLCAEEMDLTDQQLRPCKCGYQICVWCWHHIMDMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMERKMKSQKAKSKSSEGRKQLSNVRVIRRNLVYVVGLPLDLADEDLLQRREYFGQYGKVLKVSMSRTAAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEDRPLRACFGTTKYCHAWLRNMPCSNPDCVYLHEIGSQEDSFTKDEVVSAYTRSHIQQITGAVTNMERRSGNVLPPPLDDCTSNISGKPIVKNSASNSVSTVRGLPPNGSPAKPLAPHAAWGLRATNCQPAAGVPTGLSKPKSDSISSTLPFSSAVAGTVQVSLHSDTIKRPLSSDGRHSIMPGAKNNCIDVLANGGEKTLASDVSLAPVNLNTQLSSIPLARDSCRGCTTSNTTKSIDIATNSIGSFSPGEATTATNEEIQDLSYELSSVDLDRNAQNEHYSITKPSSPPPDYVFVKSKQPQGSEYNNVDKYRDAIIANAASKASISDNEVCNSKEPYDLKLDSQAEVASGYVEVEDDVTSFDSQRLKDPEVVCHSYLPKSSFPRVTNHNNPHPLPHGEPCTVVNGGSLATDNEVGYEPLLHGSKALCNGYSEKLDSTSSYRLLRDERNDHHIGRLISEAVNIGNDAATDKGESSIISNILSMEFDSWDDSVLSPHSLAKLLSESTENQNGPLKKSSSWNVQANQSRFSFARQEDSKIQAFDVNPSHGANQQFLRSHSLIQDFVETTDVSLDKIGVANGFPSTNNIDESENIGSGQFVASFNKPSAVPKAQISAPPGFSAPSRPPPPGFSSHERMGQAFDSTSGNSLLDPFLWRNSYQTPSAGNFGGAGDIEFMDPAILAVGKGRLQGALNGPMLDMQSNYSPQLNYFENEARLQLLMQRSLSPQQNHRFSEIGNTFSHLGDSYGISSRIDQSQVSNLASFPQLALQQSRNAHLPNGNWDGWNEMQNGNSMGMAELLRNERLGFSKFHRGYDDSKYQMPNSGDLYNRTFGI* 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0733 1016 SUPERFAMILY RNA-binding domain, RBD 104 190 IPR035979 GO:0003676
Mal4g0733 1016 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIF) FAMILY PROTEIN 1 1016 - -
Mal4g0733 1016 CDD RRM_CNOT4 105 204 IPR034261 -
Mal4g0733 1016 MobiDBLite consensus disorder prediction 793 825 - -
Mal4g0733 1016 CDD mRING-HC-C4C4_CNOT4 9 58 IPR039515 -
Mal4g0733 1016 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 196 IPR000504 GO:0003723
Mal4g0733 1016 Gene3D - 111 192 IPR012677 -
Mal4g0733 1016 SUPERFAMILY RING/U-box 3 66 - -
Mal4g0733 1016 SMART rrm1_1 111 192 IPR000504 GO:0003723
Mal4g0733 1016 MobiDBLite consensus disorder prediction 280 299 - -
Mal4g0733 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Mal4g0733 1016 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 1 1016 IPR039780 GO:0004842|GO:0030014
Mal4g0733 1016 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 190 IPR000504 GO:0003723
Mal4g0733 1016 Pfam RING/Ubox like zinc-binding domain 9 61 - -
Mal4g0733 1016 ProSiteProfiles Zinc finger RING-type profile. 9 57 IPR001841 -
Mal4g0733 1016 SMART rrm2_1 111 192 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0733 Mal-Chr4 8187193 8193808 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0733 K10643 - gmx:100796804 1416.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal7g2169 7 77457747 77464642 Mal4g0733 4 8187193 8193808 PCT