Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0580 ATGGCTCATCCTCTGAAATTTGCAAGTGAGAAGAATTATGATCACCTTATAAAGCTTCTTTTGATCGGCGATAGTGGTGTTGGAAAGAGTTCCCTTCTTCTACGTTTCTCTGATAGTTATTTCACAACTAGTTATATTACAACACTAGGCATTGATTATAAAAATAGAACCATTGAGTTGGATGGAAAAAAGATTATGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGCGGTGCTATGGGCATATTGCTAGTCTATGATGTTACAAATGAATCTTCATTTAACAATATCAAGAATTGGATTCGTAGCATTGAGCAACATTCTTCAGACAATACTGTCAACAGAATATTGGTTGGTAACAAAACTGACTTGGGTGAAAGCAAAAGGGTTGTGCCTTTCTCCAAGGGCCAAGCACTAGCCAATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGGAAAATCTAGACGTGGACGAAGCTTTCTTCTCAATTGCAAGGGATATAAAACAAAGGCTTCCTGACTCTAAGAAAACGCCGACAAGAATTAGAATCAACAGACACGACAATGCAACTGCAACACGTGGTGCACAGAAGTCGGCATGCTGTGGTTGA 645 0.3953 MAHPLKFASEKNYDHLIKLLLIGDSGVGKSSLLLRFSDSYFTTSYITTLGIDYKNRTIELDGKKIMLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTNESSFNNIKNWIRSIEQHSSDNTVNRILVGNKTDLGESKRVVPFSKGQALANEYGIKFFETSAKENLDVDEAFFSIARDIKQRLPDSKKTPTRIRINRHDNATATRGAQKSACCG* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0580 214 SMART rab_sub_5 17 182 - -
Mal4g0580 214 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 196 IPR027417 -
Mal4g0580 214 TIGRFAM small_GTP: small GTP-binding protein domain 16 172 IPR005225 GO:0005525
Mal4g0580 214 Pfam Ras family 18 180 IPR001806 GO:0003924|GO:0005525
Mal4g0580 214 SMART ran_sub_2 22 212 - -
Mal4g0580 214 Gene3D - 9 213 IPR027417 -
Mal4g0580 214 CDD Rab8_Rab10_Rab13_like 14 182 - -
Mal4g0580 214 SMART rho_sub_3 19 182 IPR001806 GO:0003924|GO:0005525
Mal4g0580 214 ProSiteProfiles small GTPase Ras family profile. 9 214 IPR001806 GO:0003924|GO:0005525
Mal4g0580 214 SMART ras_sub_4 18 182 - -
Mal4g0580 214 ProSiteProfiles small GTPase Rho family profile. 10 180 - -
Mal4g0580 214 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 2 214 - -
Mal4g0580 214 ProSiteProfiles small GTPase Rab1 family profile. 12 213 - -
Mal4g0580 214 PRINTS Transforming protein P21 ras signature 17 38 - -
Mal4g0580 214 PRINTS Transforming protein P21 ras signature 121 134 - -
Mal4g0580 214 PRINTS Transforming protein P21 ras signature 58 80 - -
Mal4g0580 214 PRINTS Transforming protein P21 ras signature 40 56 - -
Mal4g0580 214 PRINTS Transforming protein P21 ras signature 157 179 - -
Mal4g0580 214 PANTHER LD44762P 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0580 Mal-Chr4 5776882 5779796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0580 K07901 - sly:544288 315.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0580 4 5776882 5779796 Mal4g0580 4 5776882 5779796 ECH
Mal4g0580 4 5776882 5779796 Mal7g2232 7 79474799 79477934 ECH
Mal4g0580 4 5776882 5779796 Mal7g2232 7 79474799 79477934 PCT