Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g0415 ATGTTTTCAAATGTGACAGGATTGCTTAATAGGGGACATAAGATAAGAGGGACAGTGGTATTGATGCGTAAGAATGTGTTGGACTTCAACACAATTGTGAGTATTGGTGGTGGAAACATCCATGGAGTCATCGACTCCGGCATCAATCTCATTGGTTCAACTGTTGATGGCCTCACTGCCTTCTTGGGTCGAAGTGTTTCCCTCCAGCTCATTAGTGCTACCAAACCCGATGCAAATGGAAAAGGGAAAGTTGGAAAGGATACATTTTTGGAAGGTATTCTTGCCTCATTACCAACCTTGGGAGCTGGTGAAAATGCATTCAATATTCATTTTGAATGGGATGATGAGATGGGAATTCCAGGTGCATTTTACATCAAGAACTATATGCAAGTTGAGTTTTACCTCAAGAGTCTAACTCTTGAAGATGTTCCAAACCACGGAACCATTCGCTTTGTATGCAACTCTTGGGTTTACAACTCAAAACTCTACAAAAGTCCCCGCATTTTCTTCGCCAACAAGTCATATCTTCCAAGTGAGACACCATCTCCACTAGTCAAGTATAGAGAAGAAGAATTGCAAAATTTAAGGGGAGATGGAAAGGGAGAGCGCAAGTTACATGAAAGGATTTATGATTATGATATCTACAATGATTTAGGCAATCCGGATCTCGGTGAAAATTTTGCTCGACCGGTTCTTGGAGGGTCTAGCACCCATCCCTACCCTCGCAGGGGTAGGACTGGTCGATATCCGACAAGGAAAGATCCGAATTCTGAGAAACCGGCTACAGAAATATATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCCTCTGACTTTCTTACATATGGAATAAAATCTGTATCTCAATGTGTATTACCTGCATTTGAATCTGCATTTGATTTGAATTTTACACCACGCGAGTTTGATAGTTTTCAAGATGTGCGTGACCTCTTTGAAGGTGGAATTAAGCTGCCGCTCGATGTAATTAGCACAATTAGCCCCTTACCTGTGATCAAAGAAATCTTTCGTACTGATGGTGAAAATGTCCTCAAGTTTCCACCACCTCATGTCATTAAAGTGAGTAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGAGAAATGCTTGCCGGTGTAAATCCTTGCATGATTCGCGGTCTTCAAGAGTTTCCTCCAAAAAGCAATCTAGATCCCACAGTCTATGGTGATCAAACTAGTAAGATAACCGCAGATGCATTGGAACTTGATGGGTGCACAGTAGATGAGGCACTTGCTAGTGGGAGGTTATTTATATTAGATTACCATGATACATTTATTCCATTTCTGAGACGGATAAATGAGACTTCTGCAAAGGCTTATGCTACTAGGACGATTCTTTTTCTAAAAGAAGATGGAACTTTGAAGCCAGTGGCCATTGAATTAAGTTTGCCACATCCCGATGGTGACAAATCAGGTGTCGTTAGTCAAGTCATCTTACCTGCAAATGAAGGTGTTGAAAGTACTATTTGGCTATTAGCAAAAGCTTATGTGGTGGTTAATGACTCTTGCTATCATCAACTCATGAGCCATTGGTTGAATACTCATGCAGTAATTGAGCCATTCGTCATAGCAACAAATCGACAGCTTAGTGTGATTCACCCAATTTATAAACTTTTATCTCCTCATTATCGTGACACGATGAACATCAATGCACTTGCAAGAGAATCTCTAATTAATGCCAATGGCATAATAGAGAGAACTTTTTTGCCTTCGAAGTATGCTGTGGAAATGTCTTCAGCAGTTTACAAGAATTGGGTTTTCCCCGATCAAGCCCTTCCAGCTGATCTTATCAAGAGAAATATGGCCGTGAAGGATCCATCTTCTCCATATGGACTCCGTCTTCTGATAGAGGACTACCCTTATGCTGTTGATGGATTGGAGATATGGACAACTATTAAAACATGGGTCCAAGATTATGTCTCATTGTATTATGCAACAGACAATGATATCAAAAATGATTCTGAGCTTCAACAATGGTGGAAAGAAGTTGTAGAGAAAGGTCATGGTGACTTGAAAGATAAGCCATGGTGGCCCAAGGTACAAACACTTGAAGAGCTTGTGGAAGTTTGCACTATCATCATATGGACGGCTTCAGCCCTTCACGCTGCTGTTAATTTTGGACAATATCCTTACGGTGGTTTTATTCTAAACCGCCCAACTCTCAGTAGAAGATTGCTTCCTGAGAAAGGAAGTGCACAATATGATGAAATGGTGAAGAGCCCTCAAAAGGCTTACCTCAGAACAATCACACCAAAGTTTCAGACTCTTATTGACCTTTCTGTGATAGAAATCTTGTCAAGACATGCTTCTGATGAAGTCTACCTTGGACAAAGGGAAAATCCTCATTGGACTTCTGATTCAAAAGCTTTACAAGCATTTCAGAAGTTTGGAAATCAGCTGGCAGAAATTGAAGCAAAACTTGCAAAGAAGAACAATGATCCGAGCCTTAACCATCGACTTGGACCGGTTCAATTGCCGTACACTTTGCTTCATCCCTCCAGTAAAGAAGGGTTAACCTTTAGAGGAATTCCCAATAGCATCTCTATCTAA 2592 0.4074 MFSNVTGLLNRGHKIRGTVVLMRKNVLDFNTIVSIGGGNIHGVIDSGINLIGSTVDGLTAFLGRSVSLQLISATKPDANGKGKVGKDTFLEGILASLPTLGAGENAFNIHFEWDDEMGIPGAFYIKNYMQVEFYLKSLTLEDVPNHGTIRFVCNSWVYNSKLYKSPRIFFANKSYLPSETPSPLVKYREEELQNLRGDGKGERKLHERIYDYDIYNDLGNPDLGENFARPVLGGSSTHPYPRRGRTGRYPTRKDPNSEKPATEIYVPRDENFGHLKSSDFLTYGIKSVSQCVLPAFESAFDLNFTPREFDSFQDVRDLFEGGIKLPLDVISTISPLPVIKEIFRTDGENVLKFPPPHVIKVSKSAWMTDEEFAREMLAGVNPCMIRGLQEFPPKSNLDPTVYGDQTSKITADALELDGCTVDEALASGRLFILDYHDTFIPFLRRINETSAKAYATRTILFLKEDGTLKPVAIELSLPHPDGDKSGVVSQVILPANEGVESTIWLLAKAYVVVNDSCYHQLMSHWLNTHAVIEPFVIATNRQLSVIHPIYKLLSPHYRDTMNINALARESLINANGIIERTFLPSKYAVEMSSAVYKNWVFPDQALPADLIKRNMAVKDPSSPYGLRLLIEDYPYAVDGLEIWTTIKTWVQDYVSLYYATDNDIKNDSELQQWWKEVVEKGHGDLKDKPWWPKVQTLEELVEVCTIIIWTASALHAAVNFGQYPYGGFILNRPTLSRRLLPEKGSAQYDEMVKSPQKAYLRTITPKFQTLIDLSVIEILSRHASDEVYLGQRENPHWTSDSKALQAFQKFGNQLAEIEAKLAKKNNDPSLNHRLGPVQLPYTLLHPSSKEGLTFRGIPNSISI* 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g0415 863 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 12 175 IPR036392 GO:0005515
Mal4g0415 863 Gene3D - 497 862 - -
Mal4g0415 863 MobiDBLite consensus disorder prediction 231 260 - -
Mal4g0415 863 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 390 409 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 454 478 IPR001246 GO:0016491
Mal4g0415 863 PRINTS Plant lipoxygenase signature 776 790 IPR001246 GO:0016491
Mal4g0415 863 PANTHER LIPOXYGENASE 1 863 IPR000907 GO:0016702|GO:0046872
Mal4g0415 863 Pfam Lipoxygenase 184 846 IPR013819 GO:0016702|GO:0046872
Mal4g0415 863 ProSiteProfiles PLAT domain profile. 46 171 IPR001024 GO:0005515
Mal4g0415 863 Coils Coil 807 827 - -
Mal4g0415 863 Gene3D - 276 364 IPR027433 -
Mal4g0415 863 PRINTS Lipoxygenase signature 539 559 IPR013819 GO:0016702|GO:0046872
Mal4g0415 863 PRINTS Lipoxygenase signature 501 518 IPR013819 GO:0016702|GO:0046872
Mal4g0415 863 PRINTS Lipoxygenase signature 519 536 IPR013819 GO:0016702|GO:0046872
Mal4g0415 863 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 863 IPR013819 GO:0016702|GO:0046872
Mal4g0415 863 ProSitePatterns Lipoxygenases iron-binding region signature 2. 546 556 IPR020834 GO:0016702|GO:0046872
Mal4g0415 863 SUPERFAMILY Lipoxigenase 176 863 IPR036226 -
Mal4g0415 863 SMART LH2_4 13 172 IPR001024 GO:0005515
Mal4g0415 863 Gene3D - 365 496 - -
Mal4g0415 863 CDD PLAT_LH2 13 172 IPR042057 -
Mal4g0415 863 Pfam PLAT/LH2 domain 73 170 IPR001024 GO:0005515
Mal4g0415 863 ProSitePatterns Lipoxygenases iron-binding region signature 1. 519 533 IPR020833 GO:0016702|GO:0046872
Mal4g0415 863 Gene3D PLAT/LH2 domain 4 175 - -
Mal4g0415 863 PANTHER SEED LINOLEATE 13S-LIPOXYGENASE-1 1 863 - -
Mal4g0415 863 Gene3D - 176 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g0415 Mal-Chr4 3572442 3576531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g0415 1 863 Acyl Lipid Metabolism Gene Families AT1G55020 57.758 0.0 1032
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g0415 K15718 - gmx:547774 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0637 5 10255741 10256966 Mal4g0415 4 3572442 3576531 PCT