Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4621 ATGGTGGCAATGGCCATGGTTGCAGCGCAACAATTCCTATGCTTCTCATCAGAATCAAATTGTAGGATTACAACAATAAGACCATGCATTCCTCTTCCTCACTTCAGTTGCATTCTTCTACGCTCACGCAAAAACAAGATTCATTTTCCACTCATATCATGTTCTTCATCATCACAGACACCAGAAGCTGAAATTCAAACTGCTGAATCTTGTGTCAATTTGGGTCTTGAGCTCTTTTCCAAAGGAAGGGTTAAAGATGCTTTGACTCAGTTTGAAACAGCGCTTTCTTTGAATCCTAATCCTGTAGAGGCTCAAGCTGCATTCTATAACAAAGCTTGTTGTCATGCATACAGAGGAGAAGGAAAGAAAGCTGCTGATTGTCTCCGCTCTGCTTTGAGGGAATACAACCTAAAATTTGGTACTATTCTCAATGATCCAGACTTGGCCTCCTTCAGAGCTTTGCCTGAATTCAAAGAACTACAAGAAGAGGCAAGGCTGGGTGGGGAAGATGTTGGCTCCAGTTTTCGAAGAGATCTAAAACTTATCAGTGAAGTTCAAGCACCATTTCGCGGGATTAGGAGATTCTTTTACGTAGCATTTACAGCAGCTGCAGGAATATCGTTGTTCTTTAATGTACCGAGGATATTGCGTGCAATTCAAGGGGGTGACGGTGCTCCTGATATCTTGGAAACTGCTGGCAATGCTGCCGTTAACATTGGAGGTATTGTTGTTTTTGTGGCATTATTCCTTTGGGACAATAAAAAAGAGGAGGAACAGATTGCACAAATATCCCGAAATGAGACATTATCAAGATTGCCTTTGCGCCTGTCAACTAATCGCGTAGTTGAACTCGTGCAGCTAAGGGACACAGTTAGGCCGGTTATAATAGCTGGGAAAAAAGAAACAGTGACTTTGGCTTTGCGCAAAGCAGAGAGATTTCGAACTGATCTCCTTAGACGTGGTGTTTTGTTAGTTCCGGTCATCTGGGGAGAAGGTAGAGAAACCAAAATTGAAAAGAAAGGTTTTGGCCTTCAACCAAAGGCTGCTGAGGCTCTTCCATCCATTGGGGAAGATTTTGAGAAGCGAACACAGTCAGTAACTGCACAATCAAAATTGAAAGCTGAAGTTAGGTTCAAGGCCGAGGCTGTCTCGCCAGCAGAATGGGAACGGTGGATAAGAGATCAACAGAAGTCTGAAGGAGTTCCAGTTGGTGAAGACGTGTACATAATACTGCGTCTAGATGGGCGAGTTCGAAGATCAGGGAGAGGTATACCTGACTGGGACCAAATTGCGAAGGAGCTTCCGCCAATGGAAGCAATTTTAAGCAAGCTGGAAAGATGA 1341 0.4362 MVAMAMVAAQQFLCFSSESNCRITTIRPCIPLPHFSCILLRSRKNKIHFPLISCSSSSQTPEAEIQTAESCVNLGLELFSKGRVKDALTQFETALSLNPNPVEAQAAFYNKACCHAYRGEGKKAADCLRSALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDVGSSFRRDLKLISEVQAPFRGIRRFFYVAFTAAAGISLFFNVPRILRAIQGGDGAPDILETAGNAAVNIGGIVVFVALFLWDNKKEEEQIAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVIIAGKKETVTLALRKAERFRTDLLRRGVLLVPVIWGEGRETKIEKKGFGLQPKAAEALPSIGEDFEKRTQSVTAQSKLKAEVRFKAEAVSPAEWERWIRDQQKSEGVPVGEDVYIILRLDGRVRRSGRGIPDWDQIAKELPPMEAILSKLER* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4621 446 SUPERFAMILY TPR-like 64 134 IPR011990 GO:0005515
Mal3g4621 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 42 446 - -
Mal3g4621 446 ProSiteProfiles TPR repeat profile. 68 101 IPR019734 GO:0005515
Mal3g4621 446 Pfam Low psii accumulation1 / Rep27 176 253 IPR021883 -
Mal3g4621 446 Pfam Tetratricopeptide repeat 68 100 IPR013105 -
Mal3g4621 446 SMART tpr_5 68 101 IPR019734 GO:0005515
Mal3g4621 446 SMART tpr_5 105 138 IPR019734 GO:0005515
Mal3g4621 446 Gene3D Tetratricopeptide repeat domain 54 154 IPR011990 GO:0005515
Mal3g4621 446 PANTHER PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC 42 446 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4621 - - gmx:100784188 737.258