Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4615 ATGTATGAGATGAGTTGTTTGGCAGATAGAGTGGTGATACTGCTGAAAAGTTTTTGCCGTTCAAAAATTCATGTGAAACAGATTCAAGCACAAATCATAGTTCACAACCTTCAATCACACACCACAATTGCACAACACTTCATAACAGCATCTCAATCTCACAACCTTCTCAACTATGTTTCACCTCTCTTCACTCTCCTCATTCCAAAACCACACGTTTTCATCTTCAACTCTCTCATCAGAGCCTTCTCTCATTCCCACATCCCCAACACCCCTCTCTACTTATACTCCCACATGCACAAAAACTCTATCCTCCCCAATAACTTCACATTCCCTTTTCTCTTCAAATCACTTTCCGACTCACACTGCTTCGTTCAATCGCAATGTGTTTACACCCATGTTGTTAAACTTGGTCATGATAATGATCTTTATGTAAATAACTCTTTACTTGATGTATACGCTTCATGTGGGCATGTTGAACTTTGTCGCCAACTGTTTGATGAAATGCCTCAAAGTGATGTTGTGTCTTGGACTGTTCTGATTATGAGTTATCGAAATGGTGGGAAGTATGATGATGCATTGCTTGTGTTTGAACAAATGCAGTATGCGGGTGTGGTGCCGAATAGGGTGACTATGGTGAATGCTTTGGCTGCTTGTGCTAGCTCTAGTGCTATTGGAATGGGGGTGTGGATAGATGATATGATAAGGAGGAATGGGTGGGAATTGGATGTTGTTTTGGGGACGGCATTGATTGATATGTATGTTAAGTGTGGGAGAGTGGAAGAGGGGTTGAGGGTTTTTGGGGATATGAAGGAAAAGAATGAGTTTACTTGGAATGCTGTTATTAAAGGGTTAGCGTTGGCTAAGAGTGGTGCGGAGGCTATTTTGTGGTTTAATAGGATGGAGTTGGATGGAGTTCGAGCGGATGAAGTGACTTTGGTTGCGGTTCTTTCTGCGTGCAGTCATTCGGGTTTGGTGGATAAAGGTCAATTGATCTTTAAAATGTTGGTTGATGGAAAGTATGGATTTTTTCCTAATGTGAAACATTATGCTTGTATGGTTGATCTCTTGGCACGTGCTGGTCGATTGCAAGAGGCTTTTGAGATCATGAAATGTATGCCTTTTGAGGCTACGAAATCTATGTGGGGATCGTTGTTGGTTGGTTCTAAATCTCAGGGTGACTTGGAATTCAGTGAGTTTGTGGCTAGAAAACTGGTTGAGTTGGAGCCAGACAACACTGCCTATTATGTTCAGCTGTCAAATCTGTATGCAGAGGCAGGAAGATGGAGTGATGTTGAGAGGATAAGAGGAATGATGAAAGAGAGAGAACTGACCAAGGAGTTAGGGTGTAGTTTTGTGGAGGTTGAACACCAAAGTCATGCCAATGAACTCTTGACATAG 1401 0.4197 MYEMSCLADRVVILLKSFCRSKIHVKQIQAQIIVHNLQSHTTIAQHFITASQSHNLLNYVSPLFTLLIPKPHVFIFNSLIRAFSHSHIPNTPLYLYSHMHKNSILPNNFTFPFLFKSLSDSHCFVQSQCVYTHVVKLGHDNDLYVNNSLLDVYASCGHVELCRQLFDEMPQSDVVSWTVLIMSYRNGGKYDDALLVFEQMQYAGVVPNRVTMVNALAACASSSAIGMGVWIDDMIRRNGWELDVVLGTALIDMYVKCGRVEEGLRVFGDMKEKNEFTWNAVIKGLALAKSGAEAILWFNRMELDGVRADEVTLVAVLSACSHSGLVDKGQLIFKMLVDGKYGFFPNVKHYACMVDLLARAGRLQEAFEIMKCMPFEATKSMWGSLLVGSKSQGDLEFSEFVARKLVELEPDNTAYYVQLSNLYAEAGRWSDVERIRGMMKERELTKELGCSFVEVEHQSHANELLT* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4615 466 Gene3D Tetratricopeptide repeat domain 229 340 IPR011990 GO:0005515
Mal3g4615 466 Gene3D Tetratricopeptide repeat domain 341 463 IPR011990 GO:0005515
Mal3g4615 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Mal3g4615 466 Pfam E motif 394 454 IPR046848 -
Mal3g4615 466 SUPERFAMILY TPR-like 247 433 IPR011990 GO:0005515
Mal3g4615 466 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Mal3g4615 466 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 457 - -
Mal3g4615 466 Pfam PPR repeat 147 173 IPR002885 -
Mal3g4615 466 Pfam PPR repeat 276 306 IPR002885 -
Mal3g4615 466 Pfam PPR repeat 175 205 IPR002885 -
Mal3g4615 466 Pfam PPR repeat 248 274 IPR002885 -
Mal3g4615 466 Pfam PPR repeat 350 373 IPR002885 -
Mal3g4615 466 TIGRFAM PPR: pentatricopeptide repeat domain 248 274 IPR002885 -
Mal3g4615 466 TIGRFAM PPR: pentatricopeptide repeat domain 175 208 IPR002885 -
Mal3g4615 466 TIGRFAM PPR: pentatricopeptide repeat domain 147 174 IPR002885 -
Mal3g4615 466 TIGRFAM PPR: pentatricopeptide repeat domain 276 309 IPR002885 -
Mal3g4615 466 PANTHER - 4 457 - -
Mal3g4615 466 Gene3D Tetratricopeptide repeat domain 69 228 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4615 Mal-Chr3 126030891 126032291 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4615 73 460 Glycoside Hydrolase AT3G49170 32.570 5.01e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4615 - - lja:Lj0g3v0239469.1 697.582