Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4517 ATGCACATTGACAAAATGAGTCGCAGTGGTAGTAACTCAATTCTGCAAAACCTGAAACTGAAGAATCCCAAACTTGTGTTACTATCACAATGCTCCAACATTCACGATCTCAAAATCATCCATGCTCACATGCTAAGAACACATATTTTCTTCGACGTTTTCGCATCAAGTCGAATCATTGCTTTTTGCATAGACCACACTGCAAAATTTCTACCTTACGCCATCAAAGTTTTCTCCCAAATTCACAATCCCAACATCTTCATTTTCAACGCTTTGATCCGTGGTTGTTCCGTTAGCGAAAACCCAGAAAATTCATTTCACTATTACATTCAATCACAACGCATTGGTCTCTTACCTGATAATATAACTCACCCTTTTTTGGTTAAAGCTTGTGCTAAACTTGAGTGTTTGAAAATGGGTATGCAAGTTCATGGTCAAATACTGAAGTATGGTTTTGGAAGTGATTTTCATGTTCATCGGTCGCTTGTTTATATGTATTGTTGTTTGTGTGATTTAATGGCTGCAAGATGCATCTTTAAGATGATGGGTCGATTTGATATTGCTTCATGGACTTGTATGATCAAGGGTTATCACAAATGTGGTGATGTTGATTCTGCACGTGAACTGTTTGATAGAATGCCTGTGAAGAATTTGGTGACTTGGAGCACTATGATTAGTGGTTATTCGCGGAATAATTGTTTTGATAAAGCTGTTGAAATGTTTGAGATTCTTAAAGATGAAGGTGTGGTGGCTAATGAGGTCGTTATGGTTGGTGTGATATCTGCTTGTGCTCATTTAGGTGCTCTTGCAATTGGTGAGAAAGCTCATGAGTATGTGATGAGACATAATTTGGATTTGGATGTGATTCTTGGGACGGCGGTTGTTGATATGTATGCAAAATGTGGGAATGTTGACAAAGCTATTTGGGTTTTCGAGGAAATAAAAGAGAAAGATGTACTTTGTTGGACAGGTTTGATTTCTGGACTAGCTATGCATGGTTATGCAGAGAAAGCACTTGAGTATTTTTATGTAATGGTGAAAAATGGGATAGTTCCTAGAGATATTACATTTACTGCGGTTTTGAAAGCTTGTAGTCATGGAGGGTTGGTAGAAAAGGGCTTAGAAATATTTGAAAGCATGAAAAGAGATTATAGGGTCGAGCTGAGATTGGAGCATTATGGATGTATGGTTGACCTACTTGGAAGAGCAGGGAAGTTGGAAGAGGCGGAGAATTTTATTCGTGAAATGCCTGTGAAGCCAAATGCTCCAATATGGGGAGCATTGCTAGGAGCTTGCAGGATTCACAGAAATGTTGAAGTTGGAGAAAGGGTTGGAAATATTTTAATCGAGATGAAACCAGAACATAGTGGTTATTATGTGTTGTTGTCGAACATATATGCGCGCACAAACAAGTGGAAAGATGCTACTGTTATGAGAAGATTGATGAAGGAAAATGGGGTTAGAAAACAACCTGGATATAGTCTCATTGAGATAGATGGAAAAACTCATGAGTTTACGATTGGAGATAAAACACATCCAGAAATAGACAGAATAGAAAGAATGTGGGAAAATATACTGCAAAAAATTAAGTTAGCAGGATACATAGAAAATACTGGTGAGGCATTGTTTGACATAGATGAGGAGGAGAAAGAAGACGCGCTTCACAGGCATAGTGAGAAACTGGCCATTGCCTATGGAATTATGAATATTCAAGCTCCTGGGCCGATTCGGATTGTGAAAAACTTGCGTGTCTGTGAAGATTGTCACACAGCTACGAAGTTTATCTCGAAGGTTTTCGAAGTAGAGTTAATTGTGAGAGATAGAAACAGATTCCATCATTTTAAAAATGGTGTATGTTCTTGTATGGATTACTGGTAA 1878 0.3818 MHIDKMSRSGSNSILQNLKLKNPKLVLLSQCSNIHDLKIIHAHMLRTHIFFDVFASSRIIAFCIDHTAKFLPYAIKVFSQIHNPNIFIFNALIRGCSVSENPENSFHYYIQSQRIGLLPDNITHPFLVKACAKLECLKMGMQVHGQILKYGFGSDFHVHRSLVYMYCCLCDLMAARCIFKMMGRFDIASWTCMIKGYHKCGDVDSARELFDRMPVKNLVTWSTMISGYSRNNCFDKAVEMFEILKDEGVVANEVVMVGVISACAHLGALAIGEKAHEYVMRHNLDLDVILGTAVVDMYAKCGNVDKAIWVFEEIKEKDVLCWTGLISGLAMHGYAEKALEYFYVMVKNGIVPRDITFTAVLKACSHGGLVEKGLEIFESMKRDYRVELRLEHYGCMVDLLGRAGKLEEAENFIREMPVKPNAPIWGALLGACRIHRNVEVGERVGNILIEMKPEHSGYYVLLSNIYARTNKWKDATVMRRLMKENGVRKQPGYSLIEIDGKTHEFTIGDKTHPEIDRIERMWENILQKIKLAGYIENTGEALFDIDEEEKEDALHRHSEKLAIAYGIMNIQAPGPIRIVKNLRVCEDCHTATKFISKVFEVELIVRDRNRFHHFKNGVCSCMDYW* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4517 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 287 317 IPR002885 -
Mal3g4517 625 Gene3D Tetratricopeptide repeat domain 296 507 IPR011990 GO:0005515
Mal3g4517 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Mal3g4517 625 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 88 599 - -
Mal3g4517 625 Pfam DYW family of nucleic acid deaminases 533 625 IPR032867 GO:0008270
Mal3g4517 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Mal3g4517 625 Pfam PPR repeat 392 417 IPR002885 -
Mal3g4517 625 Pfam PPR repeat 219 249 IPR002885 -
Mal3g4517 625 Pfam PPR repeat 189 217 IPR002885 -
Mal3g4517 625 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 88 599 - -
Mal3g4517 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Mal3g4517 625 Pfam PPR repeat family 317 365 IPR002885 -
Mal3g4517 625 Pfam E motif 435 497 IPR046848 -
Mal3g4517 625 Gene3D Tetratricopeptide repeat domain 66 172 IPR011990 GO:0005515
Mal3g4517 625 Pfam E+ motif 502 529 IPR046849 -
Mal3g4517 625 Gene3D Tetratricopeptide repeat domain 173 285 IPR011990 GO:0005515
Mal3g4517 625 TIGRFAM PPR: pentatricopeptide repeat domain 321 352 IPR002885 -
Mal3g4517 625 TIGRFAM PPR: pentatricopeptide repeat domain 219 252 IPR002885 -
Mal3g4517 625 TIGRFAM PPR: pentatricopeptide repeat domain 355 382 IPR002885 -
Mal3g4517 625 TIGRFAM PPR: pentatricopeptide repeat domain 189 217 IPR002885 -
Mal3g4517 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 216 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4517 Mal-Chr3 124989931 124991808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4517 27 625 Glycoside Hydrolase AT3G49170 34.146 1.62e-121 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4517 - - gmx:100797063 997.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4517 3 124989931 124991808 Mal3g4517 3 124989931 124991808 ECH