Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4511 ATGGATGCGGGATCGTGGAGTTCTTCTACCAAGATCAAAATTCGATCCCCTTTCCCAGAACGCTTTCTTCACCGGAAGAATTCTTCTCAGGATAACTTGGACCGGTTCATCCCGAACCGATCAGCGATGGACTTTGATTATGCTCACTACATGGTGACAGAGGGTTGTAAAGAGGGAAAAGAGAATCCAGCGTTGATGTCACCTTCTCGTTCTGCCTACCAGAAACGACTCGCTGAAGCTTGCAACATGGATGGCAGAACCCGCATTTTGGTTTTCAAGAACAAGCCTCCAACACCAGTCGAACTCTTCCCTAAGGAACTTCTTTCTCCTCCTCCTGAATCAAAATCCGGCAAGCCCAAACGATCCATTCCTCAGACTTCTGAGAGGACCTTAGATGCACCTGATATCTTGGACGACTTTTATTTGAATTTATTGGATTGGGGCAGCGGCAACGTTGTAAGTATCGCTCTTGAAAACACCGTTTATCTATGGAACGCTTCAGATAGTTCGACATCAGAACTTGTTACTGTGGGTGATGATGATGGTCCTGTCACTAGTGTTTGCTGGGCCCCAGATGGTCGCCATTTAGCCATTGGGTTGAACAACTCCCATGTCCAGCTCTGGGATACCACTACTAATAAACAGCTAAGGACAATGAGGGGTGGACACAGAGCAAGAGTGGGTTCATTGGCTTGGAACAATCATATTCTGACCACAGGAGGGATGGATGGTAAAATCGTAAACAATGATGTTAGAGTGAGATATCACATCGTTGAAACATACAGGGGACACAACCAGGAGGTTTGTGGGCTCAAGTGGTCACCCTCAGGACAACAATTGGCAAGTGGTGGAAACGATAACGTTGTTCACATATGGGATAGGTCTGTGGTTTCTTCAAATTCACCTACCCGATGGCTTCACAGGTTTGAGGAACACATAGCTGCTGTGAAGGCACTGGCTTGGTGTCCTTTTCAGGGTAATCTATTGGCTTCTGGTGGAGGTGGAGGTGATCATTGCATTAAGCTGTGGAACACACACACTGGTGCGAGATTGAATTCTGTTGACACTGGATCACAAGTATGTGCTCTGCTATGGAACCAGAACGAGCGGGAGCTTCTTAGCTCGCATGGTTTCACTGAGAACCAGCTTACCCTTTGGAAGTATCCTTCGATGTTGAAGATGGCGGAGCTCAATGGTCACACTTCCAGGGTGCTGTATATGGCGCAGAGTCCAGATGGGTGTACAGTGGCATCTGCAGCTGCGGATGAAACTCTGAGATTTTGGAATGTCTTTGGAAGCCCAGCAGCAGCATGCAAAGCCGCACCAAAGACATATAATATGCCCTTTGCTAATTTCACCCATATCCGTTGA 1371 0.4726 MDAGSWSSSTKIKIRSPFPERFLHRKNSSQDNLDRFIPNRSAMDFDYAHYMVTEGCKEGKENPALMSPSRSAYQKRLAEACNMDGRTRILVFKNKPPTPVELFPKELLSPPPESKSGKPKRSIPQTSERTLDAPDILDDFYLNLLDWGSGNVVSIALENTVYLWNASDSSTSELVTVGDDDGPVTSVCWAPDGRHLAIGLNNSHVQLWDTTTNKQLRTMRGGHRARVGSLAWNNHILTTGGMDGKIVNNDVRVRYHIVETYRGHNQEVCGLKWSPSGQQLASGGNDNVVHIWDRSVVSSNSPTRWLHRFEEHIAAVKALAWCPFQGNLLASGGGGGDHCIKLWNTHTGARLNSVDTGSQVCALLWNQNERELLSSHGFTENQLTLWKYPSMLKMAELNGHTSRVLYMAQSPDGCTVASAAADETLRFWNVFGSPAAACKAAPKTYNMPFANFTHIR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4511 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
Mal3g4511 456 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 23 456 IPR033010 GO:0010997|GO:0097027|GO:1904668
Mal3g4511 456 ProSitePatterns Trp-Asp (WD) repeats signature. 196 210 IPR019775 -
Mal3g4511 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 293 - -
Mal3g4511 456 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Mal3g4511 456 PANTHER TRANSDUCIN FAMILY PROTEIN/WD-40 REPEAT PROTEIN 23 456 - -
Mal3g4511 456 CDD WD40 149 429 - -
Mal3g4511 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 218 IPR001680 GO:0005515
Mal3g4511 456 Pfam Anaphase-promoting complex subunit 4 WD40 domain 177 234 IPR024977 -
Mal3g4511 456 SMART WD40_4 170 209 IPR001680 GO:0005515
Mal3g4511 456 SMART WD40_4 302 344 IPR001680 GO:0005515
Mal3g4511 456 SMART WD40_4 212 250 IPR001680 GO:0005515
Mal3g4511 456 SMART WD40_4 254 293 IPR001680 GO:0005515
Mal3g4511 456 SMART WD40_4 390 429 IPR001680 GO:0005515
Mal3g4511 456 Gene3D - 86 432 IPR015943 GO:0005515
Mal3g4511 456 Pfam WD domain, G-beta repeat 306 344 IPR001680 GO:0005515
Mal3g4511 456 Pfam WD domain, G-beta repeat 258 293 IPR001680 GO:0005515
Mal3g4511 456 Pfam WD domain, G-beta repeat 395 429 IPR001680 GO:0005515
Mal3g4511 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 430 IPR001680 GO:0005515
Mal3g4511 456 SUPERFAMILY WD40 repeat-like 138 430 IPR036322 GO:0005515
Mal3g4511 456 MobiDBLite consensus disorder prediction 101 129 - -
Mal3g4511 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 293 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4511 Mal-Chr3 124946646 124948772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4511 194 430 Miscellaneous Gene Families AT5G08390 20.502 9.03e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4511 K03363 - gmx:100801495 717.998