Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4390 ATGGAAGCAGTATTAGCATCCCGCCATTTGACGACGCCTCTCTCTCACCATCGAACCACCACCACCACCTTCTCTTCTTCTTCTTCTTCTTCTTCGAGCAAACTTTGCTCTTCCCTTTCTTACAGGAATTCCTTCGCGAAAGAGATATGGGGTTTTGTTCAGTCGAAGAGCGTAAGTTTCAGAAGTATGGACGTGATTCGTCCAGTTGTTGTCAGGGCTGAAATGTTCGGTCAGTTAACCACCGGTCTTGAATCTGCCTGGAACAAACTCAAAGGAGAAGAGGTTTTGACCAAAGACAATATTGTGGAGCCTATGCGAGATATTAGGAGAGCTCTTTTAGAAGCTGATGTAAGTCTTCCTGTTGTAAGAAGGTTTGTGCAATCTGTTACTGATCAGGCTGTGGGTCTTGGAGTCACTCGAGGAGTCAAACCCGATCAGCAATTGGTTAAGATTGTTCATGATGAACTTGTACAATTGATGGGTGGAGAGGTCTCTGAACTGAATTTTGCCAAATCTGGGCCCACTGTCATTTTATTGGCTGGACTCCAGGGAGTTGGGAAGACAACCGTGTGTGCGAAGTTAGCAAATTATTTCAAGAAACAGGGGAAGAGTTGCATGCTAATTGCTGGGGATGTTTACAGACCTGCTGCTATTGACCAACTTACTATTTTGGGTAAACAGGTGGATGTCCCTGTCTATACAGAAGGTACCAATGTTAAACCTTCAGATATTGCTAAACAAGGTTTAGAAGAGGCCAAAAAGAAGAAAATTGATGTGGTTATTGTTGACACTGCCGGTAGGCTGCAGATAGACAAAGCAATGATGGATGAGTTAAAAGAAGTGAAGCGGGTAGTGAATCCAACAGAAGTCTTGTTAGTTGTGGATGCTATGACAGGGCAAGAAGCAGCAGCTTTGGTGACTACTTTCAATCTTGAGATTGGAATAACTGGTGCCATCTTGACAAAGCTAGATGGTGATTCGAGAGGTGGAGCAGCTTTGAGTGTCAAAGAGGTATCTGGAAAGCCAGTTAAGCTGGTAGGACGTGGGGAACGCATGGAAGATCTTGAACCTTTCTACCCTGACCGAATGGCTGGACGCATTCTAGGAATGGGAGATGTTCTGTCATTTGTGGAGAAGGCACAAGAAGTTATGCAACAAGAAGATGCTGATGACCTGCAAAAGAAGATCATGAGTGCAAAGTTTGACTTTAATGATTTTCTAAAGCAAACTCGTACTGTTGCACAAATGGGTTCTGTGTCCCGAGTCATTGGGATGATCCCTGGCATGGCAAAGGTTACTCCTGCTCAAATTCGAGAAGCAGAGAAGAATTTGCAGAACATGGAAGTGATAATAGAAGCAATGACCCCTGAGGAAAGGGAAAAGCCAGAACTGTTGGCAGAATCCCCTGTCAGGAGGAAAAGAGTTGCTCAGGGTTCAGGGAAAACAGAGCAGCAGGTAAGCCAACTTGTAGCTCAACTATTTCAAATGCGTGTTCGGATGAAGAACCTAATGGGTGTAATGGAAGGTGGATCAATGCCAACACTTAGTAATCTTGAGGAAGCACTTAAATCAGAGGAAAAGGCTCCACCTGGCACTGCAAGGAGGAGAAAGAAAGCTGAGTCAAGGAGGCTAGTTGTGGACTCAACGTCAAGGCCAACTCCTCGTGGATTCGGGAGCAAAAACTGA 1686 0.4484 MEAVLASRHLTTPLSHHRTTTTTFSSSSSSSSSKLCSSLSYRNSFAKEIWGFVQSKSVSFRSMDVIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGLGVTRGVKPDQQLVKIVHDELVQLMGGEVSELNFAKSGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLIAGDVYRPAAIDQLTILGKQVDVPVYTEGTNVKPSDIAKQGLEEAKKKKIDVVIVDTAGRLQIDKAMMDELKEVKRVVNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPVKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDADDLQKKIMSAKFDFNDFLKQTRTVAQMGSVSRVIGMIPGMAKVTPAQIREAEKNLQNMEVIIEAMTPEEREKPELLAESPVRRKRVAQGSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKSEEKAPPGTARRRKKAESRRLVVDSTSRPTPRGFGSKN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4390 561 MobiDBLite consensus disorder prediction 460 482 - -
Mal3g4390 561 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 50 559 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mal3g4390 561 MobiDBLite consensus disorder prediction 515 561 - -
Mal3g4390 561 TIGRFAM ffh: signal recognition particle protein 77 501 IPR004780 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mal3g4390 561 Hamap Signal recognition particle 54 kDa protein [srp54]. 79 516 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Mal3g4390 561 Gene3D - 164 358 IPR027417 -
Mal3g4390 561 Gene3D - 78 379 IPR042101 -
Mal3g4390 561 MobiDBLite consensus disorder prediction 520 545 - -
Mal3g4390 561 MobiDBLite consensus disorder prediction 460 478 - -
Mal3g4390 561 SUPERFAMILY Signal peptide-binding domain 400 501 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mal3g4390 561 SMART SRP54_3 174 369 IPR000897 GO:0005525|GO:0006614
Mal3g4390 561 CDD SRP_G 175 367 - -
Mal3g4390 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 427 IPR027417 -
Mal3g4390 561 SMART SRP54_N_2 75 160 IPR013822 GO:0005525|GO:0006614
Mal3g4390 561 PANTHER BNAC02G02820D PROTEIN 50 559 - -
Mal3g4390 561 MobiDBLite consensus disorder prediction 546 561 - -
Mal3g4390 561 SMART AAA_5 173 320 IPR003593 -
Mal3g4390 561 Pfam SRP54-type protein, GTPase domain 174 369 IPR000897 GO:0005525|GO:0006614
Mal3g4390 561 Gene3D - 380 504 IPR036891 GO:0006614|GO:0008312|GO:0048500
Mal3g4390 561 Pfam Signal peptide binding domain 400 498 IPR004125 GO:0006614|GO:0008312|GO:0048500
Mal3g4390 561 Pfam SRP54-type protein, helical bundle domain 79 156 IPR013822 GO:0005525|GO:0006614
Mal3g4390 561 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 342 355 IPR000897 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4390 Mal-Chr3 123455301 123460725 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4390 K03106 - gmx:100782581 893.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4390 3 123455301 123460725 Mal3g4390 3 123455301 123460725 ECH