Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4300 ATGGAGGCGCTCCTCCAATTCCAACTCAATTCTACTTTCTCCTTCCCCTCTTTCCTTCACCACCACCACCTCCGTCGCCGCCACCTCCGCCACTTCAACTTGAAACTAAAAAACCCCAAAACACACTATCCCCTTCACACCCATTCCCTCCTTCCACTTCCATTTTCCACCCCACACCCCTCACTTCTCTTCTTCTCGCTCCGCCTCTCTTCTCACCACAACAACCCCAACCTCGCCAAAACCATCCACGCCACCCTCCTCAAACACCATGAATTTCATCAAAACACTCATCTCTCCACCGCCCTCATTTCAACTTACATCAAACTCCGTTTCTTCTCCTACGCCCACCGTCTCTTCCTCTCCCTTTCCTCCCCCAACGTCGTTTCTTACTCCGCACTCATCTCCGCTTTCTCCAAATCAAACCGCGAAAAACAAGCTTTATTCCTCTTCCTTCACATGATAACCACTTCGTATCTTCACCCAAACGACTATACTTACGTCGCCGTTTTAACCGCTTGCACCCGAATCCTCAACTTCCAATTTGGTGTTCAGTTACATGCTGCGGTTATCAAAACTGGATATTTGAAATCCGCTTTTGTTTCCAATGCGCTTATGTCCTTTTATTCAAAATGTGGGTTTTGTAAGAATGCGTTGAAGGTGTTTGATGAAATGCCCGAAAGGGATATTGCATCGTGGAACACTGTAATGTCTTGTGCGGTTCAGGATTTTATGTATGAAGACGTGTTTCGATTGTTTTGTGATATGCTGCTAACTGATGCATTGAATGCGTTGAAAGTTGATTATTTTACTCTGTCAACGCTTTTGACTGCGTGTGGTGCGGGTGGTTTGGTGATGGAAGGGAAGCAAGTGCATGCGCATGCTGTTAAGGTTGGGTTGGATGCTGAATTGAATGTTGGGAATGCTCTTATTGGATTTTATATGAATTATGGAACTGTTCATGATGTGGTTTGTTTGTTTGAGAGGATGGATGTGAGAGATGTTATAACTTGGACGGAGATGGTGAGGGCATATATGGAGTTTGGTTTTGTGGATTTGGGTTTGAAGGTGTTTGATGAAATGCCGGAGAAGAATTGTGTGACTTACAGTGCACTTTTGTCTGGGTTTTGTCGAAATGGGGAGGGTTTAAAGGGTGTGGAAATGTTTATTAGAATGGTGGAGGAGGGCTTGGAGTTATCGGATTTCTCTTTGAGTAGTGGAATTAATGCTTGTAGCTTGCTTGCTGATTATAGGGTCAGCAAGCAGATGCATGGATTTGCAATCAAGTTTGGGTTTGGATCAAATGTTTGTGTTGAAGGGGCTTTGCTTGACATGTACACAAGGTGTGGGAGGATGGTAGATGCTGAGAAGATGTGGGAAGAATTGGACGAAGTTAGCAGTGTGGCTTGGACTTCCATGATGTGTGGCTATGCTCGAAACGGGCAACCGGGTGAGGCGATTTCTCTTTTCCATCTTGGTCATTCTGAAGGGAAATTGATTATGGACGAAGTGACATTAGCTTCAATTCTTGGTCTTTGTGGAACTGTCGGCAATCATGATATGGGTAAGCAAATCCATTGTCAAGTTCTTAAATTTGGCTTTCATTTTAATGTGCAAGTTGGAAATGTTGGTGTTGGTATGTATTTTAAATGTGGGAATGTAGATGATGCTATTAAGATGTTCAGTGGCATGTCCTCTACCGATATAGTTTCATGGAATACTTTGATTTCTGGATATCTTATGCACAGACAGGGCGATAGAGCATTGGAAATATGGTTGAAAATGCAGGAAGAGGGCATAAAACCTGATGAAGTTACATTCATTTTGATAATTTCAGCCTACGGACAAACTAACTTGAATTTGGTTGATGACTGCCGTAGTTTGTTTAATTCAATGAGAACTGTTTATCACGTTGAGCCAACATCTCAGCATTATTCATCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTTTGGAAGAGGCACTGGAAACTATCAATAAGATGCCTTTTAAGCCTTCTGCCTTTGTTTGGCGTGCTTTGCTTGATGGTTGCAGACTCCATAAGAATACAATGATCGGAAAATTGGCTGCCAAAAATATTCTTGCCCTGGAACCTAAAGATCCATCTACTTATATACTTGTTTCAAATTTGCATTCATCTTCTGGGAGATGGGATTGCTCTGACATGACAAGGAAAAATATGAGAGAAAAGGGATTTCGCAAACACCCGGCTCAAAGTTGGATAATTTGTCAGAAGAAAATGCATTCATTTTATGCAAGAGATAAATCTCATCCGCAAAACAAAGACATATATAGGGGGTTGGAGATTCTAATCTTAGAGTGCCTAAAACTTGGATATGAACCTGATACGAGCTTTGTTCTCCATGAAGTGGAGGAGCATCAAAAGAAAAAATTTCTATTCAATCACAGTTCAAAACTAGCAGCAACTTATGGAATATTGATGACAAAGCCAGGGAAGCCCATTCGGGTTGTAAAGAACATTCTCCTCTGTGGCGACTGTCATACATTCTTGAAATATGTATCTATTGTCACCAAGAGGGATATTTTTCTTAGAGATTCTTCAGGATTTCACTGTTTCTCTGATGGCCAGTGCTCGTGTAAAGATCAATGGTGA 2631 0.4211 MEALLQFQLNSTFSFPSFLHHHHLRRRHLRHFNLKLKNPKTHYPLHTHSLLPLPFSTPHPSLLFFSLRLSSHHNNPNLAKTIHATLLKHHEFHQNTHLSTALISTYIKLRFFSYAHRLFLSLSSPNVVSYSALISAFSKSNREKQALFLFLHMITTSYLHPNDYTYVAVLTACTRILNFQFGVQLHAAVIKTGYLKSAFVSNALMSFYSKCGFCKNALKVFDEMPERDIASWNTVMSCAVQDFMYEDVFRLFCDMLLTDALNALKVDYFTLSTLLTACGAGGLVMEGKQVHAHAVKVGLDAELNVGNALIGFYMNYGTVHDVVCLFERMDVRDVITWTEMVRAYMEFGFVDLGLKVFDEMPEKNCVTYSALLSGFCRNGEGLKGVEMFIRMVEEGLELSDFSLSSGINACSLLADYRVSKQMHGFAIKFGFGSNVCVEGALLDMYTRCGRMVDAEKMWEELDEVSSVAWTSMMCGYARNGQPGEAISLFHLGHSEGKLIMDEVTLASILGLCGTVGNHDMGKQIHCQVLKFGFHFNVQVGNVGVGMYFKCGNVDDAIKMFSGMSSTDIVSWNTLISGYLMHRQGDRALEIWLKMQEEGIKPDEVTFILIISAYGQTNLNLVDDCRSLFNSMRTVYHVEPTSQHYSSFISVLGHWGLLEEALETINKMPFKPSAFVWRALLDGCRLHKNTMIGKLAAKNILALEPKDPSTYILVSNLHSSSGRWDCSDMTRKNMREKGFRKHPAQSWIICQKKMHSFYARDKSHPQNKDIYRGLEILILECLKLGYEPDTSFVLHEVEEHQKKKFLFNHSSKLAATYGILMTKPGKPIRVVKNILLCGDCHTFLKYVSIVTKRDIFLRDSSGFHCFSDGQCSCKDQW* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4300 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 363 IPR002885 -
Mal3g4300 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 567 601 IPR002885 -
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 421 519 IPR011990 GO:0005515
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 55 180 IPR011990 GO:0005515
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 290 420 IPR011990 GO:0005515
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 181 289 IPR011990 GO:0005515
Mal3g4300 876 PANTHER OS07G0172600 PROTEIN 477 862 - -
Mal3g4300 876 PANTHER OS07G0172600 PROTEIN 36 408 - -
Mal3g4300 876 PANTHER OS07G0172600 PROTEIN 401 486 - -
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 520 618 IPR011990 GO:0005515
Mal3g4300 876 Pfam DYW family of nucleic acid deaminases 784 876 IPR032867 GO:0008270
Mal3g4300 876 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 477 862 - -
Mal3g4300 876 TIGRFAM PPR: pentatricopeptide repeat domain 366 399 IPR002885 -
Mal3g4300 876 TIGRFAM PPR: pentatricopeptide repeat domain 335 366 IPR002885 -
Mal3g4300 876 TIGRFAM PPR: pentatricopeptide repeat domain 467 491 IPR002885 -
Mal3g4300 876 TIGRFAM PPR: pentatricopeptide repeat domain 569 603 IPR002885 -
Mal3g4300 876 Pfam E motif 686 747 IPR046848 -
Mal3g4300 876 Pfam PPR repeat family 567 613 IPR002885 -
Mal3g4300 876 Pfam PPR repeat family 125 173 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 644 667 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 231 256 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 202 229 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 366 396 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 335 365 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 467 490 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 546 564 IPR002885 -
Mal3g4300 876 Pfam PPR repeat 440 461 IPR002885 -
Mal3g4300 876 Gene3D Tetratricopeptide repeat domain 619 754 IPR011990 GO:0005515
Mal3g4300 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Mal3g4300 876 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 401 486 - -
Mal3g4300 876 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 36 408 - -
Mal3g4300 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Mal3g4300 876 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4300 Mal-Chr3 122326137 122328767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4300 58 876 Glycoside Hydrolase AT3G49170 34.657 3.36e-157 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4300 - - mtr:MTR_7g103230 1494.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4300 3 122326137 122328767 Mal3g4300 3 122326137 122328767 ECH