Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4262 ATGAGTTCATCATCAGGCTCAGGTCAGAGTAGTGGTGGCCATGATCTCTCTTTCAAGATCTTGTTGATCGGTGATTCTGGTGTTGGAAAAAGTTGCTTACTTGTCACTTTCATTTCCAGCTCCTCTGTTGAAGATCTTTCACCTACCATTGGTGTTGATTTTAAGATCAAAACGCTCACTGTAGGTGGCAAGAGATTAAAACTTACAATTTGGGACACAGCTGGGCAGGAAAGGTTTAGGACTTTAACAAGTTCTTATTATAGAGGAGCACAAGGAATCATTCTCGTTTACGATGTCACAAGGAGAGAAACCTTTACAAACTTATCTCAAGTGTGGTCTAAGGAGTTGGAACTCTATTCAACTAATCAGGAGTGCGTGAAGATGTTAGTTGGAAATAAAGTTGACAGAGATTCTGAAAGGGCTGTGAGCAGAGAAGAGGGCTTAGCCCTTGCTAAAGAACTGGGGTGTGTGCTTCTTGAATGTAGTGCTAAAACTCGAGAAAATGTGGAGAAGTGCTTTGAAGAACTCGCTTTAAAGATAATGGAAGCACCTAGTCTATTGGAAGAAGGATCAACAGCAATAAAAAGGAATGTTTTAAAACAGAAACAAGAACCACAATCATCCCAAAATGGAGGCTGTTGCTCTTAA 648 0.4043 MSSSSGSGQSSGGHDLSFKILLIGDSGVGKSCLLVTFISSSSVEDLSPTIGVDFKIKTLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSQVWSKELELYSTNQECVKMLVGNKVDRDSERAVSREEGLALAKELGCVLLECSAKTRENVEKCFEELALKIMEAPSLLEEGSTAIKRNVLKQKQEPQSSQNGGCCS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4262 215 SMART rho_sub_3 20 184 IPR001806 GO:0003924|GO:0005525
Mal3g4262 215 Gene3D - 13 214 IPR027417 -
Mal3g4262 215 SMART ran_sub_2 23 214 - -
Mal3g4262 215 ProSiteProfiles small GTPase Rho family profile. 11 183 - -
Mal3g4262 215 SMART rab_sub_5 18 183 - -
Mal3g4262 215 SMART arf_sub_2 1 184 - -
Mal3g4262 215 CDD Rab18 18 180 - -
Mal3g4262 215 ProSiteProfiles small GTPase Arf family profile. 11 181 - -
Mal3g4262 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 204 IPR027417 -
Mal3g4262 215 SMART ras_sub_4 15 183 - -
Mal3g4262 215 PANTHER SMALL MONOMERIC GTPASE-RELATED 4 215 - -
Mal3g4262 215 Pfam Ras family 19 181 IPR001806 GO:0003924|GO:0005525
Mal3g4262 215 ProSiteProfiles small GTPase Ras family profile. 8 215 IPR001806 GO:0003924|GO:0005525
Mal3g4262 215 PANTHER DRAB5-RELATED 4 215 - -
Mal3g4262 215 ProSiteProfiles small GTPase Rab1 family profile. 13 214 - -
Mal3g4262 215 PRINTS Transforming protein P21 ras signature 158 180 - -
Mal3g4262 215 PRINTS Transforming protein P21 ras signature 59 81 - -
Mal3g4262 215 PRINTS Transforming protein P21 ras signature 18 39 - -
Mal3g4262 215 PRINTS Transforming protein P21 ras signature 123 136 - -
Mal3g4262 215 PRINTS Transforming protein P21 ras signature 41 57 - -
Mal3g4262 215 TIGRFAM small_GTP: small GTP-binding protein domain 18 175 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4262 Mal-Chr3 121916203 121922135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4262 1 183 EF-hand Containing Proteins AT5G27540 27.174 2.08e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4262 K07910 - gmx:100799887 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4262 3 121916203 121922135 Mal1g3131 1 48096001 48097920 PCT