Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4238 ATGGCTCTCTTTGTAGTTGCTATTTTAATCTTAATGACATCTTCAAGCAATGCTTATTGGCCACCTTCACCTGGCTACTGGCCAAGTTCAAAGTTCAAGTCTATGAGCTTTTACAAAGGTTTTACAAACCGTTGGGGCCCTCAACACCAAAGACTAGAACAAAATGCATTAACAATTTGGCTTGATAGAACCTCAGGAAGTGGATTTAAATCGGTTCGACCGTTTCGATCTGGCTACTTTGGTGCTTCCATTAAGCTTCAACCTGGTTATACTGCAGGAGTTATAACAGCTTTCTATCTATCAAACAATGAAGCACATCCTGGTTACCATGATGAAGTGGACATTGAGTTTCTAGGAACAACATTTGGAAAGCCTTATACTTTGCAGACCAATGTTTATGTAAGAGGGAGTGGTGATGGGAAAATTGTAGGTAGAGAAATGAAGTTTCATCTTTGGTTTGATCCTACCAAAAGTTTTCATCACTATGCTATACTATGGAGTCCTAAAGAGATAATATTCTTAGTGGATGATGTGCCTATAAGGAGGTACCCGAGGAAGAGTGATGCAACATTTCCTATTAGACCAATGTGGCTTTATGGTTCAATATGGGATGCTTCATCATGGGCAACTGAAGATGGAAAATACAAAGCTGATTACAAATACCAACCATTTGTTGCACAATATACAAATTTCAAAGCTAGTGGTTGCACAGCCTATGCTCCTCGTTGGTGCCATCCAGTTTCTGCATCACCATATGGTTCTGGTGGATTAAATTCACAACAAAATAGGGCTATGAGTTGGGTGCAAAGATACCATATGGTTTATAATTATTGTAGAGACCCCAAAAGAGATCATAGACTAACACCTGAATGTTGGGGTTAA 882 0.3923 MALFVVAILILMTSSSNAYWPPSPGYWPSSKFKSMSFYKGFTNRWGPQHQRLEQNALTIWLDRTSGSGFKSVRPFRSGYFGASIKLQPGYTAGVITAFYLSNNEAHPGYHDEVDIEFLGTTFGKPYTLQTNVYVRGSGDGKIVGREMKFHLWFDPTKSFHHYAILWSPKEIIFLVDDVPIRRYPRKSDATFPIRPMWLYGSIWDASSWATEDGKYKADYKYQPFVAQYTNFKASGCTAYAPRWCHPVSASPYGSGGLNSQQNRAMSWVQRYHMVYNYCRDPKRDHRLTPECWG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4238 293 Pfam Glycosyl hydrolases family 16 39 220 IPR000757 GO:0004553|GO:0005975
Mal3g4238 293 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Mal3g4238 293 Gene3D - 17 291 - -
Mal3g4238 293 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 13 228 IPR000757 GO:0004553|GO:0005975
Mal3g4238 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3 292 - -
Mal3g4238 293 SUPERFAMILY Concanavalin A-like lectins/glucanases 59 279 IPR013320 -
Mal3g4238 293 PIRSF EndGlu_transf 1 293 IPR016455 GO:0010411|GO:0016762|GO:0042546
Mal3g4238 293 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 3 292 IPR044791 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4238 Mal-Chr3 121657526 121659752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4238 1 291 Glycoside Hydrolase AT3G44990 64.605 1.39e-141 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4238 K08235 - gmx:100796698 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4238 3 121657526 121659752 Mal3g4238 3 121657526 121659752 ECH
Mal3g4238 3 121657526 121659752 Mal1g3111 1 47084694 47086887 PCT