Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4132 ATGGAGTACTTATTTGAAGCAAATGCCTTGATAAATACAATTGCAAGAAAAAAGTATGACAAACAGGTCACTGGTCGCCACAATGACACCGAGCTTCACTTCGCTGCTCGACACGGCGATGTTGCTGCCGTTAGGCAAATTCTTTCCGAGATTGATGATCAAATTATGGGAATGCTCAGTGGCGCTGAGTTTGATGCTGTGGTTGCAGATATAAGGTCCGCCATTGTCCATGAGGTCGATGAGTTGGGTGAAACTGCTTTGTTCACCGCTGCTGAGGAAGATATTGTGCAATTGCTGCTAGACCATGATCCAGAGCTAATCAAGACGTTTCCACAGTCAAATGCAACTCCTCTTGTGTCTGCCTCTACAAGAGGGCATGCAGATGTTGTTAAATTGTTACTATCATGCGATCCTAGGAAGGACCCGCAGCTTGCTCGAAGAACTGAAATGAAAGGACAAACTCCGCTTCACATGGCTGTCAAAGGGGTTAACTGTGAAATGGTGAAGTTGCTTCTTGCTGCTGATGCTGCAAGCGTTATGCTTCCTGACAAGTTTGGCAATATTGCATTGCATGTAGCTACCAGGAAGAAGAGGGTAGAGGTAATTAATATCTTAGCTGCTCAACTTTAA 630 0.4476 MEYLFEANALINTIARKKYDKQVTGRHNDTELHFAARHGDVAAVRQILSEIDDQIMGMLSGAEFDAVVADIRSAIVHEVDELGETALFTAAEEDIVQLLLDHDPELIKTFPQSNATPLVSASTRGHADVVKLLLSCDPRKDPQLARRTEMKGQTPLHMAVKGVNCEMVKLLLAADAASVMLPDKFGNIALHVATRKKRVEVINILAAQL* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4132 209 PANTHER CASKIN 139 204 - -
Mal3g4132 209 PANTHER CASKIN 96 139 - -
Mal3g4132 209 PANTHER CASKIN 18 94 - -
Mal3g4132 209 SUPERFAMILY Ankyrin repeat 11 206 IPR036770 -
Mal3g4132 209 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 139 204 - -
Mal3g4132 209 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 18 94 - -
Mal3g4132 209 Pfam Ankyrin repeats (3 copies) 32 137 IPR002110 GO:0005515
Mal3g4132 209 Pfam Ankyrin repeats (3 copies) 143 206 IPR002110 GO:0005515
Mal3g4132 209 ProSiteProfiles Ankyrin repeat region circular profile. 151 176 - -
Mal3g4132 209 Gene3D - 1 106 IPR036770 -
Mal3g4132 209 Gene3D - 107 208 IPR036770 -
Mal3g4132 209 ProSiteProfiles Ankyrin repeat profile. 151 176 IPR002110 GO:0005515
Mal3g4132 209 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1 96 139 - -
Mal3g4132 209 SMART ANK_2a 151 181 IPR002110 GO:0005515
Mal3g4132 209 SMART ANK_2a 27 56 IPR002110 GO:0005515
Mal3g4132 209 SMART ANK_2a 82 108 IPR002110 GO:0005515
Mal3g4132 209 SMART ANK_2a 113 144 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4132 Mal-Chr3 120094212 120095504 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4132 15 205 Miscellaneous Gene Families AT3G09550 50.193 2.57e-75 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4132 - - csv:101209287 241.506