Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4124 ATGCCTCGTTACGATGATAAGTATGGCAATACCCGCCTCTACGTGGGTCGCTTGTCTTCACGTACTCGTTCCCGTGATCTGGAGCGTGTTTTCAGCAGATATGGAAGCGTTCGAGATGTGGATATGAAGCATGATTACGCCTTCGTTGAATTTAGAGATCCCCGAGATGCTGATGATGCAAGATACAATTTGGATGGGCGCGACATTGATGGAAGTCGTCTTATTGTGGAATTTGCGAAAGGGGTTCCTCGGGGTTCCCGTGATTCTCGGGATTCCCGGGAATATTTGGGTCGAGGTCCACCTCCTGGATCTGGACGCTGCTTTAACTGTGGCATTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGCGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGCCATATCGAAAAGAACTGCAAGAACAGTCCCAAAAAGTTGAGCAGCCGACATGCACGGAGTGTTTCACGTTCTCCAGGCAGGTCACGTTCTCCAGCCAGGTCGCGTTCTCCTAGGAGAGGCAGAAGCAGGGACAGAAGCTACAGCCCAGCCCGCAGCTATAGCCGATCAAGATCTCCTGTAAGAAGAGATCGAAGCAGAGATCGAAGCCCAGTTCCTGAAGATAGATCACGGAGTCCTCCACCCTCCAAGTCAAGGAAGTATAGTCGATCTCCTGAAGGCAGTCCTCAAAAGAGCGCATCTCCTGGGAATGATAGGGTGGTCGCAACCCAAGATGGATCTGATTACAGTGATGGTCCTAGAGTAAAGAGCAGAAGCCCTTCAAGGGAGAATGATGATAGCCCTAAGGCTAATGGGCGCAGCCGAAGCCGCAGCCGCAGTCCCAGGGATGAGGATAGGAGCCCCATAGAGGAGGAGGATGACAACAACCGTCGCTCTCCATCACCTTAA 915 0.5213 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGSVRDVDMKHDYAFVEFRDPRDADDARYNLDGRDIDGSRLIVEFAKGVPRGSRDSRDSREYLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSSRHARSVSRSPGRSRSPARSRSPRRGRSRDRSYSPARSYSRSRSPVRRDRSRDRSPVPEDRSRSPPPSKSRKYSRSPEGSPQKSASPGNDRVVATQDGSDYSDGPRVKSRSPSRENDDSPKANGRSRSRSRSPRDEDRSPIEEEDDNNRRSPSP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4124 304 SUPERFAMILY RNA-binding domain, RBD 7 106 IPR035979 GO:0003676
Mal3g4124 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Mal3g4124 304 MobiDBLite consensus disorder prediction 219 246 - -
Mal3g4124 304 SMART rrm1_1 12 77 IPR000504 GO:0003723
Mal3g4124 304 MobiDBLite consensus disorder prediction 140 304 - -
Mal3g4124 304 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33-LIKE ISOFORM X1 9 272 - -
Mal3g4124 304 Gene3D - 127 179 - -
Mal3g4124 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Mal3g4124 304 Gene3D - 85 126 - -
Mal3g4124 304 Pfam Zinc knuckle 127 144 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 Pfam Zinc knuckle 106 121 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 9 272 - -
Mal3g4124 304 MobiDBLite consensus disorder prediction 177 217 - -
Mal3g4124 304 SUPERFAMILY Retrovirus zinc finger-like domains 97 145 IPR036875 GO:0003676|GO:0008270
Mal3g4124 304 SMART c2hcfinal6 106 122 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 ProSiteProfiles Zinc finger CCHC-type profile. 128 144 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 ProSiteProfiles Zinc finger CCHC-type profile. 106 121 IPR001878 GO:0003676|GO:0008270
Mal3g4124 304 MobiDBLite consensus disorder prediction 253 304 - -
Mal3g4124 304 Gene3D - 3 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4124 Mal-Chr3 120025260 120028344 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4124 K12896 - gmx:100813237 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4124 3 120025260 120028344 Mal3g4124 3 120025260 120028344 ECH