Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4010 ATGGCCATAACCGCCACCATTTCCGTCGCTATTACACCACCCACTCGCCGCTCTGTCAATTTCTCTCTCCCTTCTTCCCGATCCATTTCAGCTACACAACAACGCACTTTCAAATACCCTAATTCCCGCCTCGTTGCGCTTGCTTCGTCAATGAAAACAGAAACTCCCGTTAAAACAACATCTTCTACTTCCTTCCTTCACCAGAAGGAGAGTGGTTTTCTCCATTTCGCTAAGTATCATGGTCTCGGAAACGACTTCGTTTTGATTGATAATAGAGACTCTTCGGAACCAAAGATTAGTTCCGATAAAGCTGTGCAACTTTGTGATCGTAACTTTGGTGTTGGTGCTGATGGTGTTATCTTTGTTTTGCCTGGTATCAATGGTACTGACTATACAATGAGGATTTTCAACTCTGATGGTAGTGAGCCTGAGATGTGTGGAAATGGAGTGCGATGCTTTGCCAAATTTGTTTCTCAGCTTGAGAGTTTACATGGAAGGCACAGTTTCACCATACACACTGGTGCTGGGAAGATTGTTCCAGAGGTCTTGGAGGATGGAAATGTCAGAGTTGATATGGGGGAACCGATTCTTAAAGCATCAGATGTGCCTACTAAATTATCTCCAAATAAGGATCATGCTGTTGTTAAATCAGAGATAGATGTTGATGGAATTATCTGGAATGTGACTTGTGTTAGCATGGGAAATCCACACTGTGTAACCTTCAGCAATAAAGGAAGTCAGAATTTGCTTGTTGATGAATTGAAGCTAGCAGAAATTGGCCCAAAATTTGAACATCATGAGGTGTTCCCTGCACGAACTAACACAGAGTTTGTGCAAGTTCTTTCTAATACTCACCTAAAGATGCGTGTTTGGGAGCGTGGTGCAGGAGCAACTCTTGCCTGTGGAACTGGAGCTTGTGCTACGGTTGTTGCAGCAGTTCTTGAGGGTCGTGCTGGGCGGAACTGCACGGTTGATCTACCTGGAGGGCCTCTTCAGATTGAATGGAAGGATGAAGATAATCATGTCTATATGACAGGTTCTGCAGAACTAGTGTATTATGGCTCTTTGCCCCTTTGA 1077 0.4401 MAITATISVAITPPTRRSVNFSLPSSRSISATQQRTFKYPNSRLVALASSMKTETPVKTTSSTSFLHQKESGFLHFAKYHGLGNDFVLIDNRDSSEPKISSDKAVQLCDRNFGVGADGVIFVLPGINGTDYTMRIFNSDGSEPEMCGNGVRCFAKFVSQLESLHGRHSFTIHTGAGKIVPEVLEDGNVRVDMGEPILKASDVPTKLSPNKDHAVVKSEIDVDGIIWNVTCVSMGNPHCVTFSNKGSQNLLVDELKLAEIGPKFEHHEVFPARTNTEFVQVLSNTHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLQIEWKDEDNHVYMTGSAELVYYGSLPL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4010 358 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 33 357 - -
Mal3g4010 358 TIGRFAM DapF: diaminopimelate epimerase 75 356 IPR001653 GO:0008837|GO:0009089
Mal3g4010 358 Hamap Diaminopimelate epimerase [dapF]. 74 358 IPR001653 GO:0008837|GO:0009089
Mal3g4010 358 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 47 205 - -
Mal3g4010 358 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 209 342 - -
Mal3g4010 358 ProSitePatterns Diaminopimelate epimerase signature. 137 151 IPR018510 GO:0005737|GO:0008837|GO:0009089
Mal3g4010 358 Pfam Diaminopimelate epimerase 76 196 IPR001653 GO:0008837|GO:0009089
Mal3g4010 358 Pfam Diaminopimelate epimerase 230 351 IPR001653 GO:0008837|GO:0009089
Mal3g4010 358 PANTHER DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC 33 357 IPR001653 GO:0008837|GO:0009089
Mal3g4010 358 SUPERFAMILY Diaminopimelate epimerase-like 74 203 - -
Mal3g4010 358 SUPERFAMILY Diaminopimelate epimerase-like 218 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4010 Mal-Chr3 118604664 118608995 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4010 K01778 - gmx:100807528 607.831