Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3983 ATGGGTCAAGGAACACCAGGCGGTTTGAACCGGCAAGGTGGTTTACCGGGCGACCGGAAACCAGACGGCAATGATAAGAAGGAAAAAAAATTCGAACCGGCCGCACCACCGGCTCGCGTAGGCCGCAAACAGCGAAAACAAAAGGGTTCCGAGGCGGCGTCACGGTTACCGACGGTAACTCCGTTATCGAAGTGCAAACTGAGATTATTGAAACTGGAACGAATCAAAGACTATTTGTTGATGGAAGAAGAATTTGTTGCGAATCAGGAACGGTTGAAGCCTCAGGAAGAGAAAGCTGAAGAGGATAGATCTAAGGTTGATGATCTTAGAGGCTCGCCTATGAGTGTTGGGAATCTTGAAGAGCTTATTGATGAGAATCATGCTATTGTCTCGAGTTCGGTTGGACCGGAGTATTATGTTGGGATTTTGTCTTTTGTTGATAAGGATCAGTTGGAACCTGGTTGCGCTATTTTGATGCATAACAAGGTTCTTTCTGTTGTTGGGCTTCTTCAAGATGAAGTTGATCCAATGGTATCTGTCATGAAGGTTGAGAAGGCTCCTTTGGAATCATATGCTGACATTGGTGGTTTAGATGCTCAGATACAGGAAATTAAAGAAGCTGTCGAGCTTCCCCTGACACATCCTGAGCTGTATGAAGATATTGGTATCAAGCCTCCAAAGGGAGTCATTTTATATGGAGAACCTGGAACCGGAAAGACTCTACTTGCAAAGGCTGTGGCCAACTCAACATCAGCCACATTCTTGCGTGTTGTTGGTAGTGAATTGATTCAAAAATACTTAGGAGATGGTCCAAAACTTGTGAGGGAACTTTTCCGAGTTGCTGATGATCTTTCTCCATCTATTGTCTTCATTGATGAAATTGACGCTGTTGGTACAAAGAGGTATGATGCTCACTCAGGTGGAGAGCGTGAAATTCAAAGGACCATGTTGGAGCTGCTGAACCAGTTAGATGGTTTTGATTCTAGAGGAGATGTTAAAGTTATTCTCGCAACCAACAGAATTGAAAGCCTCGATCCAGCTCTGCTGCGACCAGGTCGAATAGACAGGAAGATTGAATTTCCTCTCCCTGATATCAAAACTAGGAGACGCATTTTCACGATACATACATCAAGGATGACATTAGCTGATGATGTCAATTTAGAAGAATTTGTCATGACTAAGGATGAGTTCTCTGGAGCTGATATAAAAGCAATATGTACCGAAGCTGGCTTACTTGCTTTACGAGAACGCCGAATGAAGGTGACCCATCCTGACTTTAAGAAGGCTAAAGATAAAGTGATGTTTAAGAAGAAAGAAGGGGTGCCTGAAGGATTGTATATGTGA 1344 0.436 MGQGTPGGLNRQGGLPGDRKPDGNDKKEKKFEPAAPPARVGRKQRKQKGSEAASRLPTVTPLSKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGCAILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFTIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKDKVMFKKKEGVPEGLYM* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3983 447 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 82 434 IPR005937 GO:0005737|GO:0030163|GO:0036402
Mal3g3983 447 MobiDBLite consensus disorder prediction 1 57 - -
Mal3g3983 447 MobiDBLite consensus disorder prediction 91 111 - -
Mal3g3983 447 MobiDBLite consensus disorder prediction 91 109 - -
Mal3g3983 447 Pfam ATPase family associated with various cellular activities (AAA) 229 362 IPR003959 GO:0005524|GO:0016887
Mal3g3983 447 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 440 IPR027417 -
Mal3g3983 447 MobiDBLite consensus disorder prediction 18 36 - -
Mal3g3983 447 SMART AAA_5 225 364 IPR003593 -
Mal3g3983 447 PANTHER BNAA08G13550D PROTEIN 20 447 - -
Mal3g3983 447 CDD AAA 195 362 - -
Mal3g3983 447 Pfam Proteasomal ATPase OB C-terminal domain 116 169 IPR032501 -
Mal3g3983 447 ProSitePatterns AAA-protein family signature. 332 350 IPR003960 GO:0005524|GO:0016887
Mal3g3983 447 Gene3D - 182 362 IPR027417 -
Mal3g3983 447 Gene3D - 114 181 IPR012340 -
Mal3g3983 447 Gene3D - 367 441 - -
Mal3g3983 447 Pfam AAA+ lid domain 384 427 IPR041569 -
Mal3g3983 447 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 20 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3983 Mal-Chr3 118241780 118246921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3983 190 432 Miscellaneous Gene Families AT3G47060 44.355 1.24e-54 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3983 K03062 - gmx:100798835 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3983 3 118241780 118246921 Mal3g3983 3 118241780 118246921 ECH