Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3959 ATGACGAGAATTCACCGGAATCGTGATCGCACCGGTAATTCCCACGGCAGCAATGTCTTTAATTTGCTTGCACGGAGAGAGATTTCACCGAGAACAAAACATGGAGCAAGAGATGCAAAGCGTGGCCTCCTGTCATGGGTTGAGGCTGATTCACTGCGGCATTTGTCAGCCAAGTATTGTCCTTTATTACCTGCCCCAAGGTCTACTATTGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCATCCACGCATGGTGACCACACAGTAAAGATAATTGACTGTGAAACTGGACGTTGCTTAAAGGTGTTAATTGGTCATATGAGGACGCCTTGGGTGGTTAGGTTCCATCCATTGCATCCACAAATACTTGCCAGTGGGAGCTTGGATCAAGAAGTTCGATTATGGGATGCTAACACATCGGAGTGCATAACATCTCACCATTTCTATCGACCAATTGCATCCATTGCTTTTCATGCCAAAGGGGAAATAATTGCCGTTGCATCAGGCCACAAGCTGTACATATGGCACTACGACAAGAAAGGCGAAGCATCCTACTCCCCAATTTTTGTGTTAAAGACAAGACGATCTCTACGGGCTGTGCATTTTCACCCTCATGGTGCGCCATATCTTTTAACTGCTGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTATTGGTTATTTACAATATCCTCCACCTGCTGTTTTTGTCACAAATGTTCATCCTACGGAACATGTAACTTTGTCCAGTGAACCACCCAATGTGTCATTGCCTTTCTTCTTCGTGCCTTCATATAGTGTTGATGAGTCGAGAACAGAATTACAGCATGCTAGTCATGACGCTGGCTCAGCTAGAATACCAATCGAATCTTCTGCCGTGGTTCAGTTTCAAGCGGACACAAATGCAACAGAACAACATGATACTACAATGTCTCCCATGGATACAGTCTCCGAGATTCCCACTAACTCTCAAGCTGGTACAGAATATCCTGCGCATACTGCTTTCTCTAATGGAATGGGAATTGGCATCCGCAACCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGTCAACACGGAAACCCTACTGATGCAAGTTCTCTCAATGGTATGTTACATGGACTATCTAGACAAACTGCAAATCCTGGGGTTCATTCAGAGGTTGGTCAATTTCAACAGTCTGTTTCTTCAAGAGACCCAAGTGGATGGGAATTACCTTTTCTACAAGGATGGATGATGGGTCAAAGCCAAGCTGGTATCCCCTCAATGCTACCTCACATGGGTGTTAGTCGTGACACTCTAGCTCAACAGATTAGTTCTAGTGTAATGGCTAATACTCTTTCCACTTCTAATGCTGATCCAGCAGTGCCATCTTCAGCAATGTCTGGCAGCATTAACATACCCGGATCTTCCGTAAGATCAGGTTTACGGAGTAATTTTTCACACTCATGGACACCCGTATCTGAATCCGGAAATCTTGCTGCTTCTATTAATACCCCACATGATGGATCTGACATCCAAACCATCATGAGTCGAATCCAGTCAGAACTCGCAACATCTGTGGCTGCAGCGGCAGCTACCGAGTTGCCTTGTACCGTGAAGTTAAGGGTGTGGTCTCATGACATAAAAAATCCCTGTTCCCCACTCAATGCTGACAGATGTCGTCTAATCATACCTCATGCCGTCCTCTGCAGTGAAATGGGTGCTCACTTTTCACCATGTGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCACATATAGAAGCTGATCCAGGATTACAAACTCCAGTACATCAAGAGTCTGGTATTGCAACATCACCAACTCGGCATCCAATATCAGCACACCAAGTTATGTATGAGCTGCGAATATATTCCCTTGAGGAGGCAACATTTGGATTGGTGCTTGCGTCTCGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCACCTACATCCGAGCACATACTCCTTGCCTATGGTCGACGTCATGGTTCTCTTCTTAAAAGCATTGTCATTGATGGAGAAACAACATTACCTATATATACAGTATTAGAGGTATATAGAGTTTCGGATATGGAACTTGTTAGGGTGCTTCCGAGTGCTGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTCCCGGGGGCGGGCTAGTTTATGGAACAAAGGAAGGAAAGCTTAGGATCCTCCACTATGATGGTGCTCACCCGGTGAATGGGACTGGACCAAGTTACTTTCCTGAGGAGACCATCGTTGGAGTCAGTCAGTGA 2322 0.4518 MTRIHRNRDRTGNSHGSNVFNLLARREISPRTKHGARDAKRGLLSWVEADSLRHLSAKYCPLLPAPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGRCLKVLIGHMRTPWVVRFHPLHPQILASGSLDQEVRLWDANTSECITSHHFYRPIASIAFHAKGEIIAVASGHKLYIWHYDKKGEASYSPIFVLKTRRSLRAVHFHPHGAPYLLTAEVNDLDSSDSSMTEATSIGYLQYPPPAVFVTNVHPTEHVTLSSEPPNVSLPFFFVPSYSVDESRTELQHASHDAGSARIPIESSAVVQFQADTNATEQHDTTMSPMDTVSEIPTNSQAGTEYPAHTAFSNGMGIGIRNLTMDGMETDETRPAEGSQHGNPTDASSLNGMLHGLSRQTANPGVHSEVGQFQQSVSSRDPSGWELPFLQGWMMGQSQAGIPSMLPHMGVSRDTLAQQISSSVMANTLSTSNADPAVPSSAMSGSINIPGSSVRSGLRSNFSHSWTPVSESGNLAASINTPHDGSDIQTIMSRIQSELATSVAAAAATELPCTVKLRVWSHDIKNPCSPLNADRCRLIIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQESGIATSPTRHPISAHQVMYELRIYSLEEATFGLVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFPGGGLVYGTKEGKLRILHYDGAHPVNGTGPSYFPEETIVGVSQ* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3959 773 MobiDBLite consensus disorder prediction 360 412 - -
Mal3g3959 773 Gene3D - 53 229 IPR015943 GO:0005515
Mal3g3959 773 ProSitePatterns Trp-Asp (WD) repeats signature. 124 138 IPR019775 -
Mal3g3959 773 MobiDBLite consensus disorder prediction 367 412 - -
Mal3g3959 773 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 36 772 - -
Mal3g3959 773 Pfam WD domain, G-beta repeat 98 137 IPR001680 GO:0005515
Mal3g3959 773 Pfam WD domain, G-beta repeat 71 94 IPR001680 GO:0005515
Mal3g3959 773 SMART WD40_4 97 137 IPR001680 GO:0005515
Mal3g3959 773 SMART WD40_4 708 748 IPR001680 GO:0005515
Mal3g3959 773 SMART WD40_4 56 94 IPR001680 GO:0005515
Mal3g3959 773 SMART WD40_4 140 177 IPR001680 GO:0005515
Mal3g3959 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 104 146 IPR001680 GO:0005515
Mal3g3959 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 104 142 - -
Mal3g3959 773 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 63 750 IPR011047 -
Mal3g3959 773 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 36 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3959 Mal-Chr3 117845224 117849763 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3959 71 239 Miscellaneous Gene Families AT5G08390 24.176 9.65e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3959 - K17985 gmx:100817857 1301.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3959 3 117845224 117849763 Mal3g3959 3 117845224 117849763 ECH