Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3935 ATGATAACGACGATGAGGGAGGAGGATGAAGGTGAGATGATTGGTCCTCCCCCGCCGCCACCTGGTTCTAATTTCGATGATTCTGAACACGAAGACGATTCGGATCAAGACGAACTTGGAAACCGCTTTCGTATTCCTCTTAGCAATGAGATTGTCCTCAAAGGCCATACAAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGATCCAGAGTACTATCTGGAAGCTATGACTATATGGTTTATATGTACGGCTTTCAAGGAATGAATTCTCGGCATCAAATTCGCAACTTAAGTTGGAGTCCAACTGCGGATCGTTTTTTGTGTGTGACCGGATCAGCTCAAGCTAAGATTTATGATCGTGATGGCCTCACTCTTGGTGAGTTTATAAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGTCATATAACTGGATTGACTTGTGGCGAGTGGCACCCAAAAACTAAGGAGACTATTTTAACATCATCAGAGGATGGGTCGCTCCGCATATGGGATGTAAATGACTTCACAACTCAGAAGCAGGTCATTAAACCAAAGCTTGCTAGACCTGGAAGAGTTCCTGTCACCACATATGCATGGAATCATGATGGTAAATGCATTGCTGGTGGTATAGGAGACGGTTCTATACAGGTTTGGAGTATTAAACCCGGATGGGGGAGTAGGCCTGATATACATTTTGAAAAATGTCATGAGGATGATATTACTACTCTGAAATTTTCTACTGATGGGAGAATCTTATTGTCAGGGAGCTTTGATGATTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAAGCATTGAAGGTATTTAAAGAACTGCCAAATCACTATGCACAAACAAATGTTGGCTTCAGTCCTCATGAGCAGCTATTTTTTACTGGAACATCTGTAGAAAGGGATAGCTCAACAGGAGGTTTATTATGCTTCTTTGATAGACTGAATCTCGAGCTTGTTTCAAAAGTTGGCATATCCCCCACTTGCAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTCGCAACTGTTGGTGATAAAAGCCAAGTAGGGACTCACATACTATATGATCCAACCATCGTTGAGAGAGGAGCTCTTGTTTGTGTTTCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAAGCAAATCCTGTCATTCACAATCCTCATGCTTTACCTCTATTTAGAGATCAGCCAAGCCGCAAGCGTCAGCGAGAGAAGGTATTAAAGGATCCATTCAAGTCCCATAAGCCTGAACTACCCATGACAGGACCTGGCTTTTTGGTGGAAGAGTCGGTACAAAAAGGGGGCATGATTAAGGAGACTTGGATGGATGAAGATCCAAGGGAAGCTATCCTAAAGTATGCTGATGTTGCAGCAAAAGAACCAAAGTTCATAGCTCCAGCATATGCCGAAACTCAACCTGAGCCATTGTTTGCGAAGTCAGATTCTGAAGATTAA 1497 0.4269 MITTMREEDEGEMIGPPPPPPGSNFDDSEHEDDSDQDELGNRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYMVYMYGFQGMNSRHQIRNLSWSPTADRFLCVTGSAQAKIYDRDGLTLGEFIKGDMYIRDLKNTKGHITGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFTTQKQVIKPKLARPGRVPVTTYAWNHDGKCIAGGIGDGSIQVWSIKPGWGSRPDIHFEKCHEDDITTLKFSTDGRILLSGSFDDSLKVWDLRKTKEALKVFKELPNHYAQTNVGFSPHEQLFFTGTSVERDSSTGGLLCFFDRLNLELVSKVGISPTCSVVQCSWHPKLNQIFATVGDKSQVGTHILYDPTIVERGALVCVSRAPRKKSIDDFEANPVIHNPHALPLFRDQPSRKRQREKVLKDPFKSHKPELPMTGPGFLVEESVQKGGMIKETWMDEDPREAILKYADVAAKEPKFIAPAYAETQPEPLFAKSDSED* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3935 498 MobiDBLite consensus disorder prediction 1 40 - -
Mal3g3935 498 Gene3D - 20 127 IPR015943 GO:0005515
Mal3g3935 498 ProSitePatterns Trp-Asp (WD) repeats signature. 162 176 IPR019775 -
Mal3g3935 498 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Mal3g3935 498 PRINTS G protein beta WD-40 repeat signature 256 270 IPR020472 -
Mal3g3935 498 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Mal3g3935 498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 237 271 - -
Mal3g3935 498 SMART WD40_4 229 269 IPR001680 GO:0005515
Mal3g3935 498 SMART WD40_4 46 85 IPR001680 GO:0005515
Mal3g3935 498 SMART WD40_4 181 223 IPR001680 GO:0005515
Mal3g3935 498 SMART WD40_4 132 175 IPR001680 GO:0005515
Mal3g3935 498 SMART WD40_4 87 120 IPR001680 GO:0005515
Mal3g3935 498 Gene3D - 128 370 IPR015943 GO:0005515
Mal3g3935 498 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 177 - -
Mal3g3935 498 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 6 497 - -
Mal3g3935 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 184 IPR001680 GO:0005515
Mal3g3935 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 53 94 IPR001680 GO:0005515
Mal3g3935 498 Pfam WD domain, G-beta repeat 140 175 IPR001680 GO:0005515
Mal3g3935 498 Pfam WD domain, G-beta repeat 51 83 IPR001680 GO:0005515
Mal3g3935 498 Pfam WD domain, G-beta repeat 238 269 IPR001680 GO:0005515
Mal3g3935 498 Pfam WD domain, G-beta repeat 197 223 IPR001680 GO:0005515
Mal3g3935 498 SUPERFAMILY WD40 repeat-like 30 358 IPR036322 GO:0005515
Mal3g3935 498 ProSitePatterns Trp-Asp (WD) repeats signature. 256 270 IPR019775 -
Mal3g3935 498 ProSiteProfiles Trp-Asp (WD) repeats profile. 237 278 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3935 Mal-Chr3 117523789 117549355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3935 162 342 Miscellaneous Gene Families AT5G08390 26.923 4.15e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3935 K24752 - gmx:100815380 872.848