Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3914 ATGGCGTCTTCGTATCAGGGTTCCGTTAGTGCTGCCCAGGTTGGTTCTTACTTTGTTGGACAGTATTATCAAGTTCTTCGTCAGCAACCTGATCTTGTTCACCAGTTTTACTCTGATTCGAGTTCGATGATTCGTGTTGATGGTGATTATACTGAGACTGCATCTGATGTGCTGCATATTCACAATATTGTCACATCGCTGAATTTTTCAACAATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGAGTGATTGTAATGGTTACGGGTGTTGTTAAGAACAAAGATGTCAATAGGAAGCAGAAGTTTGTTCAAACCTTCTTCCTTGCCCCTCAGGATAAGGGTTATTTTGTACTCAATGATATATTTCAGTTCGTTGAAGATGATGCAGTGCATCCGAATTTTGTCCCGGTGATTTCTGAAAAGATTGACTCACAGCCACATGTTTCTGCTTCTTTTGCTGAACCACCAGCTTCGGACTATGGTTTCGAGGAAGAAGCAAGAGAATATGTCAACTCAGTTCATATAAATGATGATCCAGTTGACAAGTATAGTCTTCCTGAGCAGCAGCAGCAACTACAAGAAGATTTCGAGACCGAAGTTGTGGTGGATGAAACTCCGGCACAGGAGGCATCTCCACCAGCGCATAATGTTGCACATACTATCCGTGAAACCCCTGTTGCTCCTGTGGAAGAGTCTTTTGAGGAACCTGCTAAGAAAACTTATGCATCTATTTTACGCGCCAAAGGCCAAGCAGCGTTGTCTGCTGCACCACTACATGCCCCACAGCATTCCTTTAAAAGTGCTCCTCCTCCTTCAGAGTTTAATCATGTGACACAGCCTGCTGTTCACCAGTCAGTTGCGCAGCCTGCTTTCCAGCAGCCAAGCTCAGCATCTGCATATGTTTCCGAGTCCGGGCCTGAGGCAGCAGAAGAAGGTTACAGATTTGAAGAAGAAGAAGTAACATCTGTCTATGTGAGAAACCTGCCTGCTGATATTACCGAAGCTGAGATTGACCAGGAATTTAAGAATTTCGGCAGAATTAAGCCGGACGGAATATTCATAAGGGTTCGACAGGAAATTGGAGTTTGCTATGCATTTGTGGAATTTGAAGACGTTGTTGGCACACAAAATGCGCTTCAGGCTTCTCCCATTCAATTGGCTGGAAGACCAATATACATAGAGGAGCGAAGGCCAAGCACTAGTAGTGCAACTCGAGGAGGAAGAGGAAGGGGAAGAGGCAGAGGCAGTTATCCAACGGATGGTTCTAGAGGGCGTTTTGGTGGTCGGAGCTCGGGAAGGGGATATTATCAGGATACTTCAGACTACACCAGACCAAGAGGTGATGGTTATCTTCAGCGTGCTTCACGATAG 1383 0.4512 MASSYQGSVSAAQVGSYFVGQYYQVLRQQPDLVHQFYSDSSSMIRVDGDYTETASDVLHIHNIVTSLNFSTIEIKTINSLDSWDGGVIVMVTGVVKNKDVNRKQKFVQTFFLAPQDKGYFVLNDIFQFVEDDAVHPNFVPVISEKIDSQPHVSASFAEPPASDYGFEEEAREYVNSVHINDDPVDKYSLPEQQQQLQEDFETEVVVDETPAQEASPPAHNVAHTIRETPVAPVEESFEEPAKKTYASILRAKGQAALSAAPLHAPQHSFKSAPPPSEFNHVTQPAVHQSVAQPAFQQPSSASAYVSESGPEAAEEGYRFEEEEVTSVYVRNLPADITEAEIDQEFKNFGRIKPDGIFIRVRQEIGVCYAFVEFEDVVGTQNALQASPIQLAGRPIYIEERRPSTSSATRGGRGRGRGRGSYPTDGSRGRFGGRSSGRGYYQDTSDYTRPRGDGYLQRASR* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3914 460 Gene3D - 3 132 - -
Mal3g3914 460 Gene3D - 300 448 IPR012677 -
Mal3g3914 460 SMART rrm1_1 326 398 IPR000504 GO:0003723
Mal3g3914 460 CDD RRM_SF 327 398 - -
Mal3g3914 460 MobiDBLite consensus disorder prediction 397 460 - -
Mal3g3914 460 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Mal3g3914 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
Mal3g3914 460 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Mal3g3914 460 MobiDBLite consensus disorder prediction 272 306 - -
Mal3g3914 460 MobiDBLite consensus disorder prediction 259 317 - -
Mal3g3914 460 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Mal3g3914 460 SUPERFAMILY RNA-binding domain, RBD 321 432 IPR035979 GO:0003676
Mal3g3914 460 CDD NTF2 10 130 IPR018222 -
Mal3g3914 460 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 454 IPR039539 -
Mal3g3914 460 PANTHER GB|AAD20086.1 9 454 - -
Mal3g3914 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 394 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3914 Mal-Chr3 117196633 117200587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3914 - - cam:101501784 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3914 3 117196633 117200587 Mal3g3914 3 117196633 117200587 ECH