Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3768 ATGGACGAAGAAATTGCAGCAGAAAGCAGAAAAGAAACCACCGAAGTAGCACCGGCACTCATCGCCGTCCACCCTGACGGCCACCACATCGCCGTCGCAGTCGGTCCGGACCTCCGCGTCTTCAACCTCCTTTCCAATTCTGCAGCTTCTTTACTCGATGAATCTGTTAACCAACCTTTTCATAAAGACAAAATCAGAGCAATTCGATTCGGTGCAAAAGGAAAACTGTTTGTATCTGCTGGTGATGATAAAACCCTAAAAATTTGGTCACCGGAAAATTGGAACTGTATTTCCACTGTTTCGTCGGAGAAGAGAGTTACAGCAGTTGCTATAAGCAATGATGGATCATATGGCTGTTTTGCTGATAAATTCGGACTTGTTTGGGTTGTGGATCTCAATGAAAATTCGAGTGATAAGAAGCCGATACCGCTTCTTTCTCATTATTGCAGTATCATCACTAGCTTGGAATTTTCGCCGGATAATCGGTTTATTTTGAGTGCTGATAGGGATTTTAAAATTCGTGTTACTAATTTCCCCAAGAATCCCTTAAATGGAGCTCATGAGATACAAAGTTTTTGTCTTGGGCATACTGAGTTTGTTTCCTGTCTTGCCTTCGTTCCAGCTCAGGAAAGCCCTCATAGTCTTCTTCTATCTGGCAGTGGTGATTCCACAGTACGATTGTGGGATATATCCTCTGGTGCACTTCTAGATACTTGTGAGGTTGCAGTTAAGGCAGGGATTTTAGAGTCAAATGGTAATGCAGAGGAGCATCACCATGCTGTTACTGATTTATGTACCACCCTGGATGGTTTGCTTGTTGCCGTGGCCATTCAGAGCTTGCGAGGAATTGTATTGTTGAGTTGCAATGTTTCAGCACAAACACTTTCTGTTGCCAAGGTTGTTTCTATTGCAGGAGACACCTTTGTGCCTACCTGCCTGGCAAACAACCCCTCTACAAGGGAATTGTGGATGGTTACAGGTGTCTCTAGTTTACCAGGTTATGATTACCCCTCTTTGGCTCGTGTCCTAGTAATTTCTGGTATTGATATTGAGCAAGAGCCAGTTGTTCTTGGAGACGATAAGATACCTGGTGGAATAAAACTGCTAGAAGCGTTACAAGGAACCGCATCTGTTGATGACAATGCTTTTTTGGTAGCAGCTGAAGCCGTCAAAGCAGCAATGTGTAACCTATTAATAAAGAAGCAATACCCTTTCGAGAATAGAGAATATAGGAAGAAAACGAGAAATGATAGAAAACTCAAGGAATAA 1269 0.4295 MDEEIAAESRKETTEVAPALIAVHPDGHHIAVAVGPDLRVFNLLSNSAASLLDESVNQPFHKDKIRAIRFGAKGKLFVSAGDDKTLKIWSPENWNCISTVSSEKRVTAVAISNDGSYGCFADKFGLVWVVDLNENSSDKKPIPLLSHYCSIITSLEFSPDNRFILSADRDFKIRVTNFPKNPLNGAHEIQSFCLGHTEFVSCLAFVPAQESPHSLLLSGSGDSTVRLWDISSGALLDTCEVAVKAGILESNGNAEEHHHAVTDLCTTLDGLLVAVAIQSLRGIVLLSCNVSAQTLSVAKVVSIAGDTFVPTCLANNPSTRELWMVTGVSSLPGYDYPSLARVLVISGIDIEQEPVVLGDDKIPGGIKLLEALQGTASVDDNAFLVAAEAVKAAMCNLLIKKQYPFENREYRKKTRNDRKLKE* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3768 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 233 - -
Mal3g3768 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Mal3g3768 422 Gene3D - 17 102 IPR015943 GO:0005515
Mal3g3768 422 Gene3D - 103 356 IPR015943 GO:0005515
Mal3g3768 422 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 27 414 IPR028884 GO:0036265
Mal3g3768 422 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Mal3g3768 422 PANTHER WD40 REPEAT PROTEIN 4 19 419 IPR028884 GO:0036265
Mal3g3768 422 SMART WD40_4 185 229 IPR001680 GO:0005515
Mal3g3768 422 SMART WD40_4 138 177 IPR001680 GO:0005515
Mal3g3768 422 SMART WD40_4 93 131 IPR001680 GO:0005515
Mal3g3768 422 SMART WD40_4 52 90 IPR001680 GO:0005515
Mal3g3768 422 ProSitePatterns Trp-Asp (WD) repeats signature. 216 230 IPR019775 -
Mal3g3768 422 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 238 IPR001680 GO:0005515
Mal3g3768 422 Pfam WD domain, G-beta repeat 61 90 IPR001680 GO:0005515
Mal3g3768 422 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Mal3g3768 422 Pfam WD domain, G-beta repeat 146 175 IPR001680 GO:0005515
Mal3g3768 422 SUPERFAMILY WD40 repeat-like 20 346 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3768 Mal-Chr3 115150127 115153095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3768 61 236 Miscellaneous Gene Families AT5G08390 25.824 2.34e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3768 K15443 - gmx:100786310 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3768 3 115150127 115153095 Mal3g3768 3 115150127 115153095 ECH