Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3680 ATGAAAAAGTTGCTGCTCCTTGTTCACCAATCTCTCCGACACAAATCACCATACCATCTCCAACACATTAAACCATTCTCATTCACAACCAACAAACCAAAATGGAACTCACCAACCAACGTGATAATCACAAACCCAACTCTCGTGATAATGGAATCATGTTCCACCATGCGTCAACTGAAACAAATTCAAGCACAAATGACTCTCACTGGCATCATCACCCACGCGTTTCCTGTCAGCAGAGTCATCGCGTTCTGTGCACTGGCCGATTCCGGAGACATTCACTACGCACACAGAATTTTCAATCGCGTAGAAGAACCCAACACGTTCATGTGGAACACCATGATCAGAGGATATCAAAATGATCGAAAACCCATTGTTGCATTCTCTTTCTTTGTTTATATGATTCGATTACGCGTTGAAATGGATTCAAAAAGTTTTGTTTTTGCACTTAAGGCTTGTGAGCAATTTAAGGGGGTTTGTGAAGGAGAATCGGTGTATTGTGTTGTTTGGAAAATGGGGTTTGATTGTGAGTTGCTTGTGAGAAATGGGTTGATTTATTTTTACTCGGAACATGGTTTGTTGAAAAATGCGCGTCAAGTGTTTGATGAAAGTTCTGAAAGGGATGTTGTTACTTGGACTACTATGATTGATGGGTATGCGGCACATGAATGTTCCGATGAGGCTATGGAGGTTTTTAAATTGATGTTGGTAAGTGATGTTGAGCCGAATGAAGTGACTTTGATTGCGGTGCTTTCGGCTTGTTCTGCGATGGGTGACCTTGAAATGGGGAAAAAAGTTCATCAAATACTGGAAGATAAGAAGAGTATGAGGTGTAGCTTGAGTTTGCATAATGCGTTGTTGGATATGTATGTGAAATGTGGTTGTTTGGTTGATGCTAGAGAGCTTTTTGATAGAATGGTAATTAAGGATGTTTACTCGTGGACTAGTATGGTTAATGGGTATGCTAAATGCGGTGACTTGGAATCTGCTAGGAGGTTTTTTGATCAAACTCCTCAGAAAAATGTGGTCTCTTGGAGTGCAATGATTGCAGGATATTCTCAAAATAACAAAGCCAAGGAATCATTGAAATTGTTTCATGAAATGATGGAGGGAGGTGTGGTTCCAATTGAGCATACCTTAGTGAGTGTACTCTCTGCTTGTGGCCAACTCACTTGCTTGAATTTGGGTCATTGGATTCACCAATACTTTGTTGTTGGAAAAAGAATGCCCCTCAATGTTACTCTTGCAAATGCAATGGTAGATATGTATGCCAAATGTGGAAGCATAGATGTTGCAGCAGAAGTTTTCAGTACAATGCCAGAGAGAAATCTGATTTCTTGGAATTCAATGATTGCAGGGTATGCTGCTAATGGTAGAGCAAAGCAAGCTATCATTGTATTTGATCAGATGAGAAATATGGGATTTAAGCCAAACAATATCACATTTGTGAGTTTGTTGACAGCTTGTAGCCATGGTGGTTTAATATCCGAAGGTCAAGAATATTTTGACAACATGGAGAGGAAGTATGGGATAAAACCCGAAAGGGGACATTATGCATGCATGGTTGATCTATTAGGTCGAACTGGACACCTCGAAGAAGCTTACAAGTTAATAACAAATATGCCAATGCAACCTTGTGAGGCTGCTTGGGGTGCCCTTCTAAATGCTTGCAGAATGCATGGCAATGTTGAGCTTGCCAGATTATCAGCGCATAATCTTCTAAGATTGGATCCAGAAGACACTGGAATATATGTACTACTGGCAAATACTTGTGCTAATGACAGAAAATGGAGTGATGTAAGGAGAGTGAAAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTCCTGGTCATAGCTTTATAGAGATAGATGGTGGGTTTGTAGAATTTTTGGTGGCCGATGGATCACACCCTCAATCTGAGGAGATCTATAAAGTTCTGGATGAAATACTTATGTTGTCAAAATTGGAAGACTATAGTTGTGACTTGTAA 1995 0.4015 MKKLLLLVHQSLRHKSPYHLQHIKPFSFTTNKPKWNSPTNVIITNPTLVIMESCSTMRQLKQIQAQMTLTGIITHAFPVSRVIAFCALADSGDIHYAHRIFNRVEEPNTFMWNTMIRGYQNDRKPIVAFSFFVYMIRLRVEMDSKSFVFALKACEQFKGVCEGESVYCVVWKMGFDCELLVRNGLIYFYSEHGLLKNARQVFDESSERDVVTWTTMIDGYAAHECSDEAMEVFKLMLVSDVEPNEVTLIAVLSACSAMGDLEMGKKVHQILEDKKSMRCSLSLHNALLDMYVKCGCLVDARELFDRMVIKDVYSWTSMVNGYAKCGDLESARRFFDQTPQKNVVSWSAMIAGYSQNNKAKESLKLFHEMMEGGVVPIEHTLVSVLSACGQLTCLNLGHWIHQYFVVGKRMPLNVTLANAMVDMYAKCGSIDVAAEVFSTMPERNLISWNSMIAGYAANGRAKQAIIVFDQMRNMGFKPNNITFVSLLTACSHGGLISEGQEYFDNMERKYGIKPERGHYACMVDLLGRTGHLEEAYKLITNMPMQPCEAAWGALLNACRMHGNVELARLSAHNLLRLDPEDTGIYVLLANTCANDRKWSDVRRVKSLMRDKGVKKIPGHSFIEIDGGFVEFLVADGSHPQSEEIYKVLDEILMLSKLEDYSCDL* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 443 IPR002885 -
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 444 478 IPR002885 -
Mal3g3680 664 PANTHER - 89 270 - -
Mal3g3680 664 Pfam PPR repeat 313 338 IPR002885 -
Mal3g3680 664 Pfam PPR repeat 519 542 IPR002885 -
Mal3g3680 664 Pfam PPR repeat 284 310 IPR002885 -
Mal3g3680 664 Pfam E motif 561 623 IPR046848 -
Mal3g3680 664 Pfam PPR repeat family 444 491 IPR002885 -
Mal3g3680 664 Pfam PPR repeat family 341 388 IPR002885 -
Mal3g3680 664 Pfam PPR repeat family 107 154 IPR002885 -
Mal3g3680 664 Pfam PPR repeat family 208 255 IPR002885 -
Mal3g3680 664 Gene3D Tetratricopeptide repeat domain 175 274 IPR011990 GO:0005515
Mal3g3680 664 Gene3D Tetratricopeptide repeat domain 50 174 IPR011990 GO:0005515
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Mal3g3680 664 Pfam E+ motif 630 652 IPR046849 -
Mal3g3680 664 PANTHER - 207 324 - -
Mal3g3680 664 PANTHER - 321 652 - -
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 341 IPR002885 -
Mal3g3680 664 TIGRFAM PPR: pentatricopeptide repeat domain 313 337 IPR002885 -
Mal3g3680 664 TIGRFAM PPR: pentatricopeptide repeat domain 446 479 IPR002885 -
Mal3g3680 664 TIGRFAM PPR: pentatricopeptide repeat domain 284 311 IPR002885 -
Mal3g3680 664 TIGRFAM PPR: pentatricopeptide repeat domain 211 245 IPR002885 -
Mal3g3680 664 TIGRFAM PPR: pentatricopeptide repeat domain 344 376 IPR002885 -
Mal3g3680 664 Gene3D Tetratricopeptide repeat domain 467 626 IPR011990 GO:0005515
Mal3g3680 664 Gene3D Tetratricopeptide repeat domain 275 405 IPR011990 GO:0005515
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Mal3g3680 664 PANTHER - 89 270 - -
Mal3g3680 664 PANTHER - 207 324 - -
Mal3g3680 664 PANTHER - 321 652 - -
Mal3g3680 664 SUPERFAMILY TPR-like 161 337 IPR011990 GO:0005515
Mal3g3680 664 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3680 Mal-Chr3 114222701 114224695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3680 65 652 Glycoside Hydrolase AT3G49170 32.053 2.22e-95 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3680 - - mtr:MTR_7g093900 1095.49