Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3551 ATGGTCGATCCTCACCTTCAACTTCAACTTCCCCACAACTTCAACCAACAACCTTTATACAGAAACATATGCAACACTCTTCTCTCTCTAACCTACTCTCGCTCCCTCCCCAAAGGTCTTCAACTCCACGCTCACATCATCAAATTAGGGTTACAAACAATCCCTCTTCTCTCTCATCACCTCATCAACTTCTACTCCAAAACCCATCTCCCTTATTCCTCCCTTCAAATCTTCAACGATTCTCCTCACAAATCCGCTACTACTTGGAGCTCCGTTATCTCTTCCTTCGCTCAAAATGACCTTCCTTTACTCTCTCTGCATTACTTTCGCCTCATGCTTCGCAATGATCTTCATCCTGATGACCATGTTTTTCCAAGTGCAACTAAATCATGTGGGATTCTATCGTCCCTCCCCGTTGCTCAAATGCTGCATTGTTTTGCTTTAAAGACGGCTTACCATGTTGATATTTTTGTGGGGAGTTCTATTGTTGATATGTATGCTAAATGTGGTGATATTGGTTATGCACGTAACGTGTTTGATGAAATGCCGTATAGAAATGTTGTTTCTTGGAGTGGGTTGATTTATGGGTATGTTCAATTAGGTGAGGATGATGAAGCTTTGAGGCTTTTTAAACGGTTTCTTGTTGAAGAAGAAAACGAGGGTGTTAATGATTTTACGCTGTCAAGTGTTTTAAGGGTTTGTGGTGGTTCGACTTTACTTCAAATGGGGAAGTTAATTCATGGGTTGAGTTTTAAGACGAGTTTTGATTCGTCTTGTTTTGTGGCGAGTTCTTTGATTTCGTTGTATTCAAAATGTGGGGTTGTTGAAGAAGCTTATGTAGTTTTTGAGGAGGTTACTGTTAGGAACCTTGGTATGTGGAATGCTATGTTGATTGCTTGTGCTCAGCATGCACATACGGATAAAACGTTTGAGTTGTTTGATGAGTTGAAGAGTGTTGGTGGTGTGAAGGCTAATTTTATTACCTTTTTGTGTGTACTTTATGCTTGCAGCCATGCAGGGTTGGTAGAGAAGGGTAAGTATTACTTCAAGTTGATGAAGGATTATGGTATTGAACCTGGGACACAACATTATTCAACCATGGTGGATTTGCTTGGTCGTGCTGGGAAGTTAAATGATGCGGTTAAAGTGATTGAGGAAATGCCTATGGAACCTACTGAATCTGTTTGGGGAGCTTTGTTAACTGGGTGTAGATTACATGGGAATACTGAATTGGCATCGTATGTTGCTGATAGAGTTTCTGAGGTGAGCTCTGTCAGTTCTGGACTTCATGTTATGCTTTCTAATGCTTATGCGGCTGCTGGGAGATGGGAGGAAGCGGCGAAAGCGAGGAAGAGGATGAGGGACAGCGGAATAAAGAAGGAAACTGGGTTGAGTTGGGTAGAGGAAGGAAACAGGGTTCACACATTTGCTTCTGGTGATAGGTCTCATGTGAAGACAGTGGAAATTTATGATAAGTTAGAGGAACTAGGAGAAGAAATGGCTAAAGCTGGTTATGTTGCTGATACTTCTTTTGTGTTAAAAGAAGTGGATGGTGAAGAGAAGAGTAGAAGTATTAGGTATCATAGTGAGAGATTAGCTATTGCATTTGGACTTATTACATTCCCTCATGGACAACCAATTAGAGTGATGAAGAATTTGCGAGTTTGTGGTGATTGTCACACTGCTATCAAGTTTATTAGTAAATGTACTGGACGGGTCATCATCGTGAGGGACAATAATCGGTTCCATCGATTTGAAGATGGAAAATGTACTTGTGGAGATTATTGGTGA 1791 0.4104 MVDPHLQLQLPHNFNQQPLYRNICNTLLSLTYSRSLPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFNDSPHKSATTWSSVISSFAQNDLPLLSLHYFRLMLRNDLHPDDHVFPSATKSCGILSSLPVAQMLHCFALKTAYHVDIFVGSSIVDMYAKCGDIGYARNVFDEMPYRNVVSWSGLIYGYVQLGEDDEALRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGKLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYVVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDELKSVGGVKANFITFLCVLYACSHAGLVEKGKYYFKLMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKVIEEMPMEPTESVWGALLTGCRLHGNTELASYVADRVSEVSSVSSGLHVMLSNAYAAAGRWEEAAKARKRMRDSGIKKETGLSWVEEGNRVHTFASGDRSHVKTVEIYDKLEELGEEMAKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGLITFPHGQPIRVMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3551 596 Gene3D Tetratricopeptide repeat domain 260 491 IPR011990 GO:0005515
Mal3g3551 596 Gene3D Tetratricopeptide repeat domain 15 137 IPR011990 GO:0005515
Mal3g3551 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Mal3g3551 596 TIGRFAM PPR: pentatricopeptide repeat domain 364 387 IPR002885 -
Mal3g3551 596 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Mal3g3551 596 TIGRFAM PPR: pentatricopeptide repeat domain 88 120 IPR002885 -
Mal3g3551 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Mal3g3551 596 PANTHER OS01G0913400 PROTEIN-RELATED 13 539 - -
Mal3g3551 596 Pfam DYW family of nucleic acid deaminases 504 596 IPR032867 GO:0008270
Mal3g3551 596 Pfam E motif 406 468 IPR046848 -
Mal3g3551 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 426 460 IPR002885 -
Mal3g3551 596 PANTHER BNAA10G28390D PROTEIN 13 539 - -
Mal3g3551 596 Pfam E+ motif 473 500 IPR046849 -
Mal3g3551 596 Pfam PPR repeat 88 116 IPR002885 -
Mal3g3551 596 Pfam PPR repeat 188 212 IPR002885 -
Mal3g3551 596 Pfam PPR repeat 263 286 IPR002885 -
Mal3g3551 596 Pfam PPR repeat 160 186 IPR002885 -
Mal3g3551 596 Pfam PPR repeat 292 320 IPR002885 -
Mal3g3551 596 Gene3D Tetratricopeptide repeat domain 139 240 IPR011990 GO:0005515
Mal3g3551 596 Pfam PPR repeat 356 387 IPR002885 -
Mal3g3551 596 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 85 119 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3551 Mal-Chr3 112698126 112699916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3551 35 596 Glycoside Hydrolase AT3G49170 36.189 8.46e-120 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3551 - - lang:109356914 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3551 3 112698126 112699916 Mal3g3551 3 112698126 112699916 ECH