Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3546 ATGGGTGAAGCACCAGCATTCCTTGTTGATGACCTTCAAGATGGACCTCTTAATGGTCTTGAATTGAAAAATGGAACTTGCAAAACAACTACTGTCGGCGAAAAAATGTATGTCACTGTTGGAGCTGATGATGGAACTTTGTCCATTGACGTTCAAATTTTTGACCGTAGTCTTGGAGAATGGGTTCACCCAACTGTGCTAGGTACCAAACCCTTGTCATGCAAAGGACACTCGGCGGTGCTTTTCGAAAACCGGATTCTAGTTCTTAAGAAGGGTTCCAAATCAGATGACCAAATATGGTTCCTAGAGGTGGACACTGAATATGTTAGGCAGCAGCGGAAAAAATTGGGGACTGAGGTTGTTGCATGGAGTAAGGGTGTGATAGGCAATGCTGAGAAACCTATTGTTATTAGTGGTCCTTCTGGAGTTGGTAAAGGAACACTGATATCAATGCTCATGAAGGAATTCCCTTCGATGTTTGGTTTTTCTGTGAGCCATACGACCCGTGCTCCGAGAAATATGGAGAAAGATGGGGTCCATTACCATTTTACCGACAAGAGTGTGATGGAGAAAGAGATTAAAAGTGGAAAGTTTCTCGAATTTGCTTCTGTCCATGGTAATTTGTACGGGACCAGTGTTGAGGCTGTTGAAGTGGTAGCAGATGCAGGAAAAAGGTGCATTCTTGATATTGATGTTCAAGGAGCAAGATCTGTTAGGGCTAGTTCTCTTGAAGCCATATTCATCTTTGTCTGTCCACCATCAATGGAAGAGCTTGAGAAGCGTCTTCGTGACAGAGGGACCGAGACTGAGGAACAGATCCTGAAGCGACTGCGTAACGCCCAGGCTGAGATTGAGCAAGGAAAGTCTTCGAATATATTTGATTTCATCTTATACAATGACAATCTTGAGGAGTGTTATGAAAGACTTAAGAAATTATTAGGACTTGATGGTTTTGTCGCTGCTCCACTTAAGTCAGAAGCACCTAGAGAGATTAATCTACCAGTGGATCATTCACTGTCTAAAATTGATGACAAAATCATCATAAACTGCGTCTCTTCGGGACTTGACAAGGAGTCAAAGAATTTGATCATGTTGGATGTTTCCTCCCTAAAAGGTGGTGCACCGGGAAGGACAAGAGGACTTGATTTTCAAGTCATAGGGTCTATGGATCAGCTTAGTTAA 1182 0.4272 MGEAPAFLVDDLQDGPLNGLELKNGTCKTTTVGEKMYVTVGADDGTLSIDVQIFDRSLGEWVHPTVLGTKPLSCKGHSAVLFENRILVLKKGSKSDDQIWFLEVDTEYVRQQRKKLGTEVVAWSKGVIGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEKDGVHYHFTDKSVMEKEIKSGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAQAEIEQGKSSNIFDFILYNDNLEECYERLKKLLGLDGFVAAPLKSEAPREINLPVDHSLSKIDDKIIINCVSSGLDKESKNLIMLDVSSLKGGAPGRTRGLDFQVIGSMDQLS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3546 393 TIGRFAM guanyl_kin: guanylate kinase 133 313 IPR017665 GO:0004385|GO:0006163
Mal3g3546 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 133 313 IPR027417 -
Mal3g3546 393 Gene3D - 18 125 IPR015915 GO:0005515
Mal3g3546 393 PANTHER TIGHT JUNCTION PROTEIN ZO-3-RELATED 1 317 - -
Mal3g3546 393 ProSitePatterns Guanylate kinase-like signature. 167 184 IPR020590 -
Mal3g3546 393 PANTHER GUANYLATE KINASE-RELATED 1 317 - -
Mal3g3546 393 CDD GMPK 134 310 - -
Mal3g3546 393 Gene3D - 128 316 IPR027417 -
Mal3g3546 393 Hamap Guanylate kinase [gmk]. 130 317 IPR017665 GO:0004385|GO:0006163
Mal3g3546 393 ProSiteProfiles Guanylate kinase-like domain profile. 132 314 IPR008144 -
Mal3g3546 393 Pfam Guanylate kinase 132 313 IPR008145 -
Mal3g3546 393 SMART gk_7 131 317 IPR008145 -
Mal3g3546 393 SUPERFAMILY Galactose oxidase, central domain 29 110 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3546 Mal-Chr3 112637323 112639848 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3546 K00942 - gmx:100808931 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3546 3 112637323 112639848 Mal3g3546 3 112637323 112639848 ECH
Mal3g3546 3 112637323 112639848 Mal1g3766 1 73949005 73952501 PCT