Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3416 ATGGCGACTGAGAATGGAGGACAAAACGGAACCACCGAAACTGCAACAACAATGATGGAGATTGAAAACGGAGATACACAACCACAACCACAACCCAAGTGTTTATTCACCAAGATTGACAATGGAAGCATAGAAAGCCATCGTTACTATTTATCTCGCAGAACAGTTCTCGAGATGCTCAAAGACAGAGGCTACTCTATTCCCTCTGATGAAATCCAGCTATCTCTTGATGAATTCCGTCAAATTCATGGCCAATCTCCTGATGTTGATCGCCTCCGTTTCACCGCCACTCATGCTACTAATCCCTCCAAAAGGATTTTGATTATATTTAGTGGGCCAGGGATAGTGAAAGTGAATGTGGTCAGGAACATAGCAGGACAGATTGTGAATAGAGATAGTTTGACTGGTCTTATTTTGATTGTGCAAAATCAAATTACTAGTCAAGCTTTGAAAGCTGTTAATCTTCTCACTTTCAAGGTTGAAATTTTTCAGATCACAGACTTGCTTGTTAATGCTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGCTAAGCAGAAAAAAAATCTCCTGAAGAAGTACGATATACAAGAAAAGCAGCTTCCCCGAATGCTACAGTCAGATGCAATTGCTCGATATTATGGACTTGAGAGGGGGCAGGTAGTTAAAGTTACCTACACTGGTGAAATCACCCAGATGCATGTCACCTATCGATGCGTGTGGTGA 732 0.4167 MATENGGQNGTTETATTMMEIENGDTQPQPQPKCLFTKIDNGSIESHRYYLSRRTVLEMLKDRGYSIPSDEIQLSLDEFRQIHGQSPDVDRLRFTATHATNPSKRILIIFSGPGIVKVNVVRNIAGQIVNRDSLTGLILIVQNQITSQALKAVNLLTFKVEIFQITDLLVNATKHVLKPKHQVLTAKQKKNLLKKYDIQEKQLPRMLQSDAIARYYGLERGQVVKVTYTGEITQMHVTYRCVW* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3416 243 PANTHER DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A 21 243 - -
Mal3g3416 243 PIRSF RPB5 38 243 IPR014381 -
Mal3g3416 243 Gene3D - 41 167 IPR036710 GO:0003677|GO:0003899|GO:0006351
Mal3g3416 243 Pfam RNA polymerase Rpb5, C-terminal domain 170 242 IPR000783 GO:0003677|GO:0003899|GO:0006351
Mal3g3416 243 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 21 243 IPR014381 -
Mal3g3416 243 SUPERFAMILY RPB5-like RNA polymerase subunit 168 243 IPR035913 -
Mal3g3416 243 Pfam RNA polymerase Rpb5, N-terminal domain 45 127 IPR005571 GO:0003677|GO:0003899|GO:0006351
Mal3g3416 243 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 43 171 IPR036710 GO:0003677|GO:0003899|GO:0006351
Mal3g3416 243 Gene3D - 168 243 IPR035913 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3416 Mal-Chr3 111009003 111012656 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3416 K03013 - gmx:100306033 352.058
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3416 3 111009003 111012656 Mal3g3416 3 111009003 111012656 ECH