Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3377 ATGAATAACATTGCTGGGAGACCACTTAATGGAGACGTAGAAGATGATGATGAAGATGAAGCTAATGGTGATGGCCTTGAAGCATGGGAGAGAGCTTATACAGAAGATAGATCGTGGGAGTCTTTGCAAGAGGATGAATCTGGACTTCTTCGTCCCGTCGATACTACAGCCATTCACCATGCTCAGTATCGTAGGCGCCTTCGCGCCCTTGCTTCAAATGCAGCTACTGCGCGAATTCAGAAGGGTTTGATACGATACTTATACATTGTTGTGGACCTGTCCAAGGCAGCTTCAGAGAGGGACTTTCGACCGAGTAGAATGGCTGTGATTGCAAAGCAGGTTGAGTTGTTTATCAGGGAGTTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACTACCAAAGATGGGGTTGCTAATTGCTTGACAGATCTTGGTGGCAGTCCTGAGTCACACATCAAAGCTTTGATGGGTAAACTAGAATGCTCAGGTGATGCCTCCCTACAAAATGCACTAGAACTTGTTCATAGCAATCTAAATCAAATCCCATCATATGGTCATCGTGAAGTTCTGATTTTATATTCGGCCCTCAGTACATGTGATCCTGGTGATATCATGGAAACTATCCAAAAATGCAAAAAGAGTAAAATAAGATGCTCTGTCATTGGTCTTGCTGCTGAAATGTTTATATGCAAGCATCTTTGCCAGGAAACTGGAGGAACATATTCAGTTGCACTAGATGAGTCTCACTTTAAAGAGTTAATTCTCGAGCATTCTCCACCACCTCCAGCAATAGCAGAGTATGCTACGGCTAATTTGATTAAGATGGGTTTCCCACAAAGAGCAGCTGAGGGTTCTGTTGCAATCTGTACATGTCATGAAGAGGCTAAGACAGGAGGGGGATACACTTGTCCAAAATGCAAAGTTCGTGTCTGTGAGCTTCCTACTGAATGCCGCATCTGTGGATTGACCCTTATTTCTTCGCCCCATTTGGCAAGGTCATATCATCATCTCTTCCCTATAGTGCCATTTGCTGAGATCTCTTCATCATCTCAAAATGATCCAAGCCAGAGTTTTCCCAATACTTGTTTTGGTTGTCAACAAAGTCTCCTTAGTCAGGGTTTTGGAACAGGAAACAAGCCTGAACTTTCCGTCTCTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGCGACATCTACATTCACGAGAGCTTACATAACTGCCCAGGCTGTGAGAGTTTCAGGCATTCTAAGTTAGTTACTACTGCCCAATGA 1281 0.4356 MNNIAGRPLNGDVEDDDEDEANGDGLEAWERAYTEDRSWESLQEDESGLLRPVDTTAIHHAQYRRRLRALASNAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTDLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPAIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPKCKVRVCELPTECRICGLTLISSPHLARSYHHLFPIVPFAEISSSSQNDPSQSFPNTCFGCQQSLLSQGFGTGNKPELSVSCPKCKQQFCLDCDIYIHESLHNCPGCESFRHSKLVTTAQ* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3377 426 ProSitePatterns Zinc finger C2H2 type domain signature. 388 408 IPR013087 -
Mal3g3377 426 Gene3D von Willebrand factor, type A domain 80 265 IPR036465 -
Mal3g3377 426 SMART C1_4_2 363 415 IPR004595 GO:0006281|GO:0008270
Mal3g3377 426 PIRSF TFIIH_SSL1 6 416 IPR012170 GO:0000439|GO:0006289|GO:0006351
Mal3g3377 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 421 IPR013083 -
Mal3g3377 426 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 19 413 - -
Mal3g3377 426 Pfam TFIIH C1-like domain 363 415 IPR004595 GO:0006281|GO:0008270
Mal3g3377 426 SMART VWA_4 84 260 IPR002035 -
Mal3g3377 426 MobiDBLite consensus disorder prediction 1 26 - -
Mal3g3377 426 Pfam Ssl1-like 90 280 IPR007198 -
Mal3g3377 426 ProSiteProfiles VWFA domain profile. 86 225 IPR002035 -
Mal3g3377 426 TIGRFAM ssl1: transcription factor ssl1 302 415 IPR012170 GO:0000439|GO:0006289|GO:0006351
Mal3g3377 426 SUPERFAMILY Cysteine-rich domain 337 414 IPR046349 -
Mal3g3377 426 CDD vWA_transcription_factor_IIH_type 82 264 IPR007198 -
Mal3g3377 426 SUPERFAMILY vWA-like 81 248 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3377 Mal-Chr3 110375899 110378857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3377 K03142 - gmx:100803090 751.125