Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3268 ATGGCCAAAGATGAGGTGGTTGAATACATGATGGATGTTGATCGTGAAGAAGAATCGGAAGGTCGTGGTATGGATAACGATGATGATGATGAAGAAGAGGAAGGGCAGGATGAATATGAACAGGATGGATTTATAGTTGATGACATTGAAGAAGAAGAAGAAGAGCAGGAAAGTGAAGAGTGTCAGAAGAAGAAGAAAAAGAGGAAAATAAAGTTGATGGAAGAGTACCTTCTTGATGAAGATGATTACGAGTTGATAGAGTACAATAATATCAATAATAACAAAAAGTTCAAGCGACTCAAAAAGGGAAGGGAAGGGCAAACTGCCGAGGACAATGATGAAGGAATCCATCTTGAAGACATTGCTGAAGAAGAGGAGGAGGATGCCGAAGATGAAATGGCCGACTTCATTGTGGATGAACAAGAAGTTGATGAGAGCAGAGCCCCTGTGAGTCCTAAGAAGCTCAAGCGTGTAAGAAAGTCTAGGCAGGCACCAGGAGTCTCTTCCTCAGCTTTACAAGATGCTCAAGAATTATTTGGTGATGTTGATAAGTTGCTCGAGGCTCGCAATCAATGTCGAGAAAAAAATGATAATAAAGAGACTAGGCTTGAAGATGATTTTGAGCCTATTGTTCTTTCGGAGAAATATATGACAGAGAAGGATGACAGGATTAGGGAGCTCGATATTCCAGAGAGAATGCAGATATCGGAGGAGAGTACTGGTGCTCCTTCACTGGATAGAGGAAGTAGCATAGATGAAGAGAGTCAGTGGATAGTTAAACAACTTAAACATGGGGCAGTCCCTTGGATTCACAAGAAAGATTCAAGGTCCCAAAATAAGGAGAAGGAGCTACTAATTAACCAGGATGATATTGTCAGATTTTTGGAACTGCACCACGTGCAAAAATTAGATATTCCTTTTATTGCAATGTATCGGAAGGAGAAGTGTTTAAGTTTATTGAAAGACCTAGAGCGACCTGAAGCTGATGATGATAATTGGGATAAGATTAACAAGACTCCTATTCTAAAATGGCACAAGATACTTTGGGCTCTTCAAGATTTGGACAGGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTTATACTACAATAAACGGTTTGAAGAAGAGTCTCGTCGTATGTATGATGAAACAAGACTAAACTCGAATAGGCAATTGTTTGAATCAGTTGTGAGATCACTGAAGGAGGCAGAATCAGAGAGGGAGGTTGACGATGTTGACTCCAAGTTCAACTTACATTTCCCGCCAGGTGAAGCTGGTGTTGATGAAGGACAGTACAAAAGGCCAAAAAGGAAGTCAATGTACAGCGCTTTCAGTAAGGCGGGTCTGTGGGAGGTTGCAAGCAGGTTTGGATGTAGTTCTGAGCAACTTGGATTACGTCTATCTCTAGTTCAGCTGCAAGAGTTGGAAGATCCAATGGAAACACCAGAAGAGGTGGCTTCTAATTTCATATGTGCTATGTACGATACCCCTGAAGAAGTACTTAAATGTGCTAGGCGCATGGCATCTGTTGAGATAAGTTGTGAGCCTATCATAAAGAAATATGTCCGTAGCCAATTTATTGACCATGCTGTGGTGTCAACCTCTCCAACTGCCGATGGAAATATAGCCATAGATTCCTTCCATCAGTTTTCTGGGGTGAAGTGGCTGCGAGAGAAGCCTTTGTCTAAATTTGAGGATGCCCAATGGCTCTTTATACAGAAGGCAGAAGAGGAAAAACTCATTCAAGTTACTATTAAGCTTCCTGAAGAGTATCTTAATAAGTTGATAGACCAATTCAACGAGCTTTATGTTAGTGACAGTGTGAGCAGATCTGCTCAACTGTGGAATGAACAAAGGAGGATAATACTGCACGATGCATTTTTCCGATTTCTTTTACCGTCAATGGAAAAAGAAGCAAGAGACGTCTTAGCAAGCAAAGCAAAGCATTGGGTACTTATGGAGTATGGGAAGGCCTTGTGGAATAAGGTTTCTGTGGGGTCTTATCAACAGAAGGAAAATGATCTTAGCTTGGATGATGAGGCTGCTCCTAGGGTTATGGCCTGCTCCTGGGGACCTGGAAAGCAACAAACAACTTTTGTTATGTTAGATTCATCAGGAGAAGTGAAAGATGTGCTATACACCGGGTCACTTACTTTAAAGTCACCGAATGCCAATGACCAACAAAGGAAGAAGAATGACCAGGAACGTCTGTTGAAGTTTATGAAAGATCACCAACCGCATGTTATTGTTTTAGGAGCAGCTAACTTGTCTTGCACTCGTTTGAAGGAAGATATATATGAGGTTATATATAAGATGGTCGAGGAAAACCCTAGAGATGTTGGCCATGAAATGGATGGGCTCAGCATTGTGTATGGAGATGAAGCTCTGCCTTGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAGCAGCTAGGTATAGTGAGGCGGGCTGTTGCTCTTGGTCGATATCTCCAGAACCCATTGGCAATGGTCGCGACATTATGTGGTCCCAGAAAGGAAATATTATCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCGGGTGATAAATTTGGGATGATTGAGCAGGTTATGGTAGATGTGACCAATCAGACTGGATTGGACATTAATTTAGCAATAAGTCATGATTGGTTATTTGCTCCGTTACAATTTATTTCGGGGCTTGGTCCACGGAAGGCTGCATCCTTGCAGAGATCGCTGGTTAGAGCTGGTGCAGTTTTTACTAGGAAGGACTTTTTTACAGAACATAAACTTGCTAAAAAGGTGTTTGTCAATGCCGTTGGTTTCTTGCGTGTCCGGCGAAGTGGATTGGCTGCTAGCAGCAGCCAATTTATTGATTTGCTGGATGATACACGAATTCATCCAGAATCATATATTCTTGCACAGGAGTTGGCCAGAGCTGTGTATGAGAAAGATGGCACAGCTGATGCAAATGACGATGACGATGCACTAGAGAAGGCCATAGAACACGTGAGAGATCAACCTAGTTATTTGAAAAACCTGGATGTTGAGGAATATGCTCGCGGCAACTGTTATCAAGACAAAACTGAAACTTTCTGTGATTTAAAAAGAGAATTGGTTCAAGGTTTTCAAGATTGGCGAAAGCAATATGAAGAACTAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACTCTTGCTGAAGGTAAAATGGTCCAAGTTACAGTTCGCCGAGTGCAAGCCCAAAAAGCAATATGTGGGCTTGAATTGGGAATGACCGGAATCCTTATGAAAGAAGACTATACTGATGACTGGAGAGATATGATGGAATTGTCTGATAGGCTACATGAAGGTGATATGCTCACCTGTAAAATCAAGTCAATCCAAAAGAACCGGTATCAAGTCTTCCTTGTTTGTAAAGATAGTGAAATGAGAAGTGATCGGTTACAGAACAAGAACAACCAGGATCTTGATCCCTATTACCATGAAGATCAGAGCTCCTTACTGAGTGAGCAAGACAAAACTCAGAAAGAAAAGGAGCGTGCAAAGTATCATTTCAAGCCAAGGATGATTGTTTATCCACGTTTTCAGAACATAACTGCAGATGAAGCAATGAAGTTCTTGTCGGACAAGGATCCTGGTGAAAGTATTTTCCGTCCTAGTTCCCGTGGTCCTTCATACCTTACTTTGACTATTAAAATTCATGATGGAGTATATGCGCACAAAGTTATAATTGAAGGTGGGAAGAAACAGAAGGACATCACAAGCTTACTTCAAATTGGAAAGACACTAAAAATTGGAGAGGACACTTTTGAGGATTTAGATGAGGTTATGGACCATTATGTTGATCCCTTGGTGACTCACTTAAAAACAATGTTAAATTATCGCAAGTTCAGGACGGGTACAAAAACAGAAATTGATGAACTCTTGATGATGGAAAAGGCCGAGCATCCAACGCGCATTGTTTATAGTTTCGGCATCTCACATGAACATCCTGGCGCATTTATACTCACTTACATAAGAAGTACGAATCTACACCACGAGTACATTGGCCTTTGCTCCGAAGGATTCAGATTCCGCAAGAAAATCTTTAAGAGCATTGACCGACTTGTGTCATATTTTCAAAAGACATTGTTAAGATAG 4161 0.4134 MAKDEVVEYMMDVDREEESEGRGMDNDDDDEEEEGQDEYEQDGFIVDDIEEEEEEQESEECQKKKKKRKIKLMEEYLLDEDDYELIEYNNINNNKKFKRLKKGREGQTAEDNDEGIHLEDIAEEEEEDAEDEMADFIVDEQEVDESRAPVSPKKLKRVRKSRQAPGVSSSALQDAQELFGDVDKLLEARNQCREKNDNKETRLEDDFEPIVLSEKYMTEKDDRIRELDIPERMQISEESTGAPSLDRGSSIDEESQWIVKQLKHGAVPWIHKKDSRSQNKEKELLINQDDIVRFLELHHVQKLDIPFIAMYRKEKCLSLLKDLERPEADDDNWDKINKTPILKWHKILWALQDLDRKWLLLQKRKSALQLYYNKRFEEESRRMYDETRLNSNRQLFESVVRSLKEAESEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSAFSKAGLWEVASRFGCSSEQLGLRLSLVQLQELEDPMETPEEVASNFICAMYDTPEEVLKCARRMASVEISCEPIIKKYVRSQFIDHAVVSTSPTADGNIAIDSFHQFSGVKWLREKPLSKFEDAQWLFIQKAEEEKLIQVTIKLPEEYLNKLIDQFNELYVSDSVSRSAQLWNEQRRIILHDAFFRFLLPSMEKEARDVLASKAKHWVLMEYGKALWNKVSVGSYQQKENDLSLDDEAAPRVMACSWGPGKQQTTFVMLDSSGEVKDVLYTGSLTLKSPNANDQQRKKNDQERLLKFMKDHQPHVIVLGAANLSCTRLKEDIYEVIYKMVEENPRDVGHEMDGLSIVYGDEALPCLYENSRISSEQLPSQQLGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPGDKFGMIEQVMVDVTNQTGLDINLAISHDWLFAPLQFISGLGPRKAASLQRSLVRAGAVFTRKDFFTEHKLAKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELARAVYEKDGTADANDDDDALEKAIEHVRDQPSYLKNLDVEEYARGNCYQDKTETFCDLKRELVQGFQDWRKQYEELSQDEEFYMISGETEETLAEGKMVQVTVRRVQAQKAICGLELGMTGILMKEDYTDDWRDMMELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSDRLQNKNNQDLDPYYHEDQSSLLSEQDKTQKEKERAKYHFKPRMIVYPRFQNITADEAMKFLSDKDPGESIFRPSSRGPSYLTLTIKIHDGVYAHKVIIEGGKKQKDITSLLQIGKTLKIGEDTFEDLDEVMDHYVDPLVTHLKTMLNYRKFRTGTKTEIDELLMMEKAEHPTRIVYSFGISHEHPGAFILTYIRSTNLHHEYIGLCSEGFRFRKKIFKSIDRLVSYFQKTLLR* 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3268 1386 Gene3D - 207 950 - -
Mal3g3268 1386 SUPERFAMILY Ribonuclease H-like 686 842 IPR012337 -
Mal3g3268 1386 Pfam Holliday-junction resolvase-like of SPT6 685 842 IPR028231 -
Mal3g3268 1386 SUPERFAMILY RuvA domain 2-like 961 1050 IPR010994 -
Mal3g3268 1386 CDD SH2_Nterm_SPT6_like 1200 1287 IPR035019 -
Mal3g3268 1386 CDD SH2_Cterm_SPT6_like 1298 1383 IPR035018 -
Mal3g3268 1386 SUPERFAMILY Nucleic acid-binding proteins 1070 1150 IPR012340 -
Mal3g3268 1386 Pfam SH2 domain 1166 1382 IPR035420 -
Mal3g3268 1386 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 41 1383 IPR017072 GO:0032968
Mal3g3268 1386 ProSiteProfiles S1 domain profile. 1075 1146 IPR003029 GO:0003676
Mal3g3268 1386 Pfam HHH domain 962 1048 IPR041692 -
Mal3g3268 1386 Gene3D - 676 1067 IPR037027 GO:0006139
Mal3g3268 1386 Pfam Helix-hairpin-helix motif 846 947 IPR032706 -
Mal3g3268 1386 MobiDBLite consensus disorder prediction 1 66 - -
Mal3g3268 1386 PIRSF Spt6 2 1386 IPR017072 GO:0032968
Mal3g3268 1386 Coils Coil 49 69 - -
Mal3g3268 1386 MobiDBLite consensus disorder prediction 1 20 - -
Mal3g3268 1386 Coils Coil 182 202 - -
Mal3g3268 1386 SMART rnase_8s 686 804 IPR006641 GO:0006139
Mal3g3268 1386 MobiDBLite consensus disorder prediction 21 57 - -
Mal3g3268 1386 Gene3D - 956 1048 IPR042066 -
Mal3g3268 1386 SUPERFAMILY SH2 domain 1202 1288 IPR036860 -
Mal3g3268 1386 MobiDBLite consensus disorder prediction 100 173 - -
Mal3g3268 1386 Gene3D SH2 domain 1297 1386 IPR036860 -
Mal3g3268 1386 Gene3D - 1068 1156 IPR012340 -
Mal3g3268 1386 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 41 1383 - -
Mal3g3268 1386 SMART S1_6 1073 1146 IPR022967 -
Mal3g3268 1386 SUPERFAMILY Tex N-terminal region-like 281 665 - -
Mal3g3268 1386 MobiDBLite consensus disorder prediction 1156 1186 - -
Mal3g3268 1386 Gene3D - 434 880 IPR023323 -
Mal3g3268 1386 Gene3D - 240 433 IPR023319 -
Mal3g3268 1386 Gene3D SH2 domain 1185 1296 IPR036860 -
Mal3g3268 1386 SUPERFAMILY RuvA domain 2-like 859 948 IPR010994 -
Mal3g3268 1386 Pfam Acidic N-terminal SPT6 25 105 IPR028083 -
Mal3g3268 1386 MobiDBLite consensus disorder prediction 116 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3268 Mal-Chr3 108804392 108811224 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3268 K11292 - gmx:100809136 2179.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3268 3 108804392 108811224 Mal3g3268 3 108804392 108811224 ECH