Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3260 ATGGCCACCGTCCTCCGAACTCCCACTTTCCGGCCATCACCACCTCTTCTCACCACCGCTGCCACCTCTTCCATTCACCCCAAAACCTCACGCGTTTCCATCGCATCCTACAGGAGAAAACCTTCACCACTTAAATCCCACCGGTTCGCTTCAATTCATTCCCTCCGGTTCGTGAAGTTAGTACCTTTTGCTTTTGACGGAGATACCGAGGCGCCGCAAGTTCAAGAATCACCAGAGGTTCAGGTTCTGGACTCTTCAGATGGTGACGTTGGTGTGGAGGATAGTACAGGTGATGATGAGTTCAGCGATGCTGGTGAAATAGCTGCTTCACCTCTGATAGTATTACTTCAGTCATACAAAGAAGCATTAGCTAATAATGATGAAGTCAAAGTTGCCGAATTGGAATCATCCTTAAAATCCATTGATGATGAGATAGTAGGCCTTGAAGGGAAAATAGCTTCCTTGTCTGAAGAGTTATCGATTGAAAAAGATCGGAAACTAAGGATTGGGGCAGACTTTGACAATTATCGTAAGAGAACTGATAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGGGAAGTTGTGGAGAGTTTGTTGCCTGTATTGGATAATTTTGAGAGAGCTAAAGCTCAGATTAAGGTGGAGACAGAGGGAGAGGAGAAAATAAACAACAGCTATCAGAGCATATATAAGCAGTTCATTGAAATTCTAAACTCACTTGGAGTTGAACCAGTGGAGACGGTTGGAAAACCCTTCGATCCAATGCTACATGAAGCAATTATGCGTGAGGATTCTGATGAATTTGAAGATGGCATCATACTTCAAGAATTCAGAAAGGGTTTTAAACTCGGTGACCGCCTCTTACGTCCATCAATGGTGAAGGTATCAGCTGGTCCAGGACCTGCAAAGTCGGAACAAGAAGTACAACAGGAAGAACAAGTCGCAAATGAAATTTCCCAGGACAGTAAAGAGAATGATGGCAACACAGAAACAGAGTCTGCTTGA 1008 0.4444 MATVLRTPTFRPSPPLLTTAATSSIHPKTSRVSIASYRRKPSPLKSHRFASIHSLRFVKLVPFAFDGDTEAPQVQESPEVQVLDSSDGDVGVEDSTGDDEFSDAGEIAASPLIVLLQSYKEALANNDEVKVAELESSLKSIDDEIVGLEGKIASLSEELSIEKDRKLRIGADFDNYRKRTDRDRLSLVTNAQGEVVESLLPVLDNFERAKAQIKVETEGEEKINNSYQSIYKQFIEILNSLGVEPVETVGKPFDPMLHEAIMREDSDEFEDGIILQEFRKGFKLGDRLLRPSMVKVSAGPGPAKSEQEVQQEEQVANEISQDSKENDGNTETESA* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3260 335 Coils Coil 124 158 - -
Mal3g3260 335 Gene3D - 124 240 IPR013805 -
Mal3g3260 335 MobiDBLite consensus disorder prediction 294 335 - -
Mal3g3260 335 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 243 299 IPR009012 GO:0006457
Mal3g3260 335 PRINTS GrpE protein signature 195 210 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 PRINTS GrpE protein signature 277 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 PRINTS GrpE protein signature 167 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 PRINTS GrpE protein signature 250 265 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 ProSitePatterns grpE protein signature. 253 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 PANTHER GRPE PROTEIN HOMOLOG 2 312 - -
Mal3g3260 335 MobiDBLite consensus disorder prediction 70 101 - -
Mal3g3260 335 CDD GrpE 163 296 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 Gene3D Head domain of nucleotide exchange factor GrpE 242 297 IPR009012 GO:0006457
Mal3g3260 335 PANTHER GRPE PROTEIN 2 312 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 146 242 IPR013805 -
Mal3g3260 335 MobiDBLite consensus disorder prediction 318 335 - -
Mal3g3260 335 Pfam GrpE 137 297 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Mal3g3260 335 Hamap Protein GrpE [grpE]. 75 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3260 Mal-Chr3 108685559 108689932 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3260 K03687 - gmx:100820521 486.878