Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3223 ATGCTAGCATGTACTACCAGCAACTTCCATGGCCCTACCACATTCCACCGCCATTCTCAACCTTCTAAGTTCCTACTCTCCAAGTCCAAGCCTCTCATCTTCCCTCCCCGTCCTCGCTTTGCCGCGTTCGGAAAATTGAAGCTCCGTTCTCCGTTTTCCGGTACAAATTGCCGTCGTTTCGATGTCAAAGCTTCAAAGGTTTTAGAATCAGTTGATGATAATAGCTTGCACATTGGACCGCAACCGTATTCCGTTAAGATTCCCGTTGGTGACCGATATATTTTGGTCGAGACTGGTCATATGGGAAGGCAAGCAAGTGGATCCGTTACAGTTACGGATGGAGAGACTATTGTGTACACCACTGTTTGTTTGGATGATATTCCTAGTGAGCCGTCCGATTTTTTCCCCCTTTCTGTGAATTATCAAGAGCGTTTTTCTGCTGCTGGTCGCACTAGTGGAGGTTTTTTTAAACGTGAAGGAAAGACAAAGGATCACGAGGTTCTTATTTGTAGATTGATTGATAGGCCTCTGCGTCCTACTATGCCTAAGGGCTTCTACCATGAAACTCAAATATTGTCTTTGGTTTTAAGTTATGATGGGTTGCATATCCCCGATTCCTTGGCTGTCACTGCAGCTGGTATAGCACTTGCACTTTCAGAAGTGCCTACGTCAAAAGCAGTTGCGGGAGTTCGAGTTGGCCTTGTTGGTGACAAGTATATAGTAAATCCTACTTCTGAGGAGATGGAAAACTCTGAGTTGGACCTCATGCTGGCTGGCACAGATAGTGCAATATTGATGATAGAGGGTTATGGCAATTTTCTTCCAGAAGAGAAGCTACTTAAAGCTGTAGAAGTTGGTCAGGATGCAGTGCGAGCAATCTGTAATGAGGTAGAAGCCTTGGTTAAGAAATGTGGGAAGCCAAAGATGATTGATGCCATCAACTTGCCTCCTCCTGAGCTTTATAAACATGTTGAGGAAATCGCTGGTGATGAGTTAGTCAAAGTTCTTCAAATTAGAAACAAAATACCAAGAAGGAAAGCCCTTTCATCATTAGAAGAAAAGGTTCTTAAGATACTTTCAGAGAATGGGTTTGTCACAAATGATACTGCACCAAGGAATAATGCTGAAACCATCGCAGAGATTCTTGAGGACGAGGATGAAGATGAAGAAGTAATTGTTGATGGTGAAGTTGATGAAGGTGATGTTCATATAAAGCCAACCCCATGGAAACCAACGCGTTTATTTTCTGAGGTAGATGTGAAGTTGGTTTTTAAAGATGTTACATCCAAGTTTTTGAGGAAACGTATAGTAGAGGGTGGGAAAAGGAGCGATGGGAGAACCCCAAACGAAATCCGTCCAATTAACTCAAGCTGTGGCTTATTGCCTAGAGCACATGGAAGTGCTCTTTTTACGAGGGGCGAGACACAGTCGCTAGCTGTTGCTACGCTTGGAGATAACAAGATGGCACAACGAATAGACAATCTTATAGTTGTTGATGATTACAAGAGGTTCTATCTGCAGTATTCGTTTCCTCCTTCATGTGTTGGGGAGGTTGGCCGGATTGGTGCACCGAATAGAAGAGAAATTGGTCACGGGATGCTTGCTGAGAGATCCCTTGAAACAATTTTGCCTTCTGATAGTGATTTCCCTTACACTATTCGTGTTGAGAGTACTATCACAGAAAGCAATGGCTCTTCGAGCATGGCATCTGTTTGTGGAGGCTGTTTAGCATTGCAAGATGCTGGGGTTCCTATTAAGTCCTCGATTGCTGGAATTGCAATGGGTTTGGTTCTTGATACCAAGGAATTTGGTGGAGATGGAACTCCGCTTATTCTGTCTGACATAACTGGATCTGAAGATGCTTCTGGTGATATGGACTTTAAGGTTGCTGGAAATGAAGATGGTATAACTGCATTTCAGATGGACATTAAGGTGGGTGGAATTACTTTGGCCATCATGAGAGAAGCACTGCTACAGGCAAAAGACGGAAGGAAACATATACTCGGAGAAATGATGAAATGCTTGCCTCCTCCAGCAAAAATGCTTTCCAAGTATGCTCCTCTGATTCACGTTATGAAGGTCAGTCCGGATAAAATAAATCTTATAATTGGCTCCGGTGGGAAAAAAGTGAAGAGCATTATTGAGCAATCTGGAATAGAGGCCATTGATACTGAAGATAATGGCACTGTGAAGATATTTGCAAGAGATTTAGCTAGTTTAGAGAAGTCTAAGGCTATCATTAGTAATTTGACAATGGTTCCAACTATTGGTGATATATTTAGGGACTGTGAAATCAAATCAATAGTTCCATATGGAGTGTTTGTAGAGATAGCACCTGGACGTGAGGGACTTTGCCATATTAGTGAACTGAGTTCAGGTTGGCTAGCTAAGGCAGAAGATGTTTTCAAGGTGGGAGATCGTATTCTTTCAAAAAAAAAAAAGGTGGGAGATCGTATTGATGTTAAACTTATAGAGATAAATGGCAAGGGACAACTCCGTCTTAGTCACCGAGCACTGCTTCCTGATGCAGATCCAGATAATTCAAATTCAACTGATAAGGGTTCATTGGAAGAAGTTATCAGCCTGACAAATGCTGGTTTAGTTGAAGAGAAAACTGAACAGAATGATAAGGTTAACACTCGTAAAGGCACAACCTCATCGAAAAGGAGTTCAGAGGATAATTCTGTACTTCCATCAAAAAAGTTTATCAGGAGATATTCTGTACTTCCATCAAAAAAGTTTATCAGGAGATCGGTCAGCCCTTCCGAGGATAAGCCTGTCACGAACAAAGACAAGATAAAGAAGAGCGGCAACAAAGATGAAAGTAGTTTGGTTGGTGAAGAGGCATAA 2850 0.4225 MLACTTSNFHGPTTFHRHSQPSKFLLSKSKPLIFPPRPRFAAFGKLKLRSPFSGTNCRRFDVKASKVLESVDDNSLHIGPQPYSVKIPVGDRYILVETGHMGRQASGSVTVTDGETIVYTTVCLDDIPSEPSDFFPLSVNYQERFSAAGRTSGGFFKREGKTKDHEVLICRLIDRPLRPTMPKGFYHETQILSLVLSYDGLHIPDSLAVTAAGIALALSEVPTSKAVAGVRVGLVGDKYIVNPTSEEMENSELDLMLAGTDSAILMIEGYGNFLPEEKLLKAVEVGQDAVRAICNEVEALVKKCGKPKMIDAINLPPPELYKHVEEIAGDELVKVLQIRNKIPRRKALSSLEEKVLKILSENGFVTNDTAPRNNAETIAEILEDEDEDEEVIVDGEVDEGDVHIKPTPWKPTRLFSEVDVKLVFKDVTSKFLRKRIVEGGKRSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDNKMAQRIDNLIVVDDYKRFYLQYSFPPSCVGEVGRIGAPNRREIGHGMLAERSLETILPSDSDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKSSIAGIAMGLVLDTKEFGGDGTPLILSDITGSEDASGDMDFKVAGNEDGITAFQMDIKVGGITLAIMREALLQAKDGRKHILGEMMKCLPPPAKMLSKYAPLIHVMKVSPDKINLIIGSGGKKVKSIIEQSGIEAIDTEDNGTVKIFARDLASLEKSKAIISNLTMVPTIGDIFRDCEIKSIVPYGVFVEIAPGREGLCHISELSSGWLAKAEDVFKVGDRILSKKKKVGDRIDVKLIEINGKGQLRLSHRALLPDADPDNSNSTDKGSLEEVISLTNAGLVEEKTEQNDKVNTRKGTTSSKRSSEDNSVLPSKKFIRRYSVLPSKKFIRRSVSPSEDKPVTNKDKIKKSGNKDESSLVGEEA* 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3223 949 Gene3D - 403 683 IPR027408 -
Mal3g3223 949 SUPERFAMILY Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 317 447 IPR036456 GO:0003723|GO:0006396
Mal3g3223 949 MobiDBLite consensus disorder prediction 868 896 - -
Mal3g3223 949 Gene3D - 757 839 IPR012340 -
Mal3g3223 949 CDD RNase_PH_PNPase_1 83 309 - -
Mal3g3223 949 Gene3D - 71 307 IPR027408 -
Mal3g3223 949 Pfam 3' exoribonuclease family, domain 1 92 222 IPR001247 -
Mal3g3223 949 Pfam 3' exoribonuclease family, domain 1 450 584 IPR001247 -
Mal3g3223 949 SUPERFAMILY Ribosomal protein S5 domain 2-like 85 222 IPR020568 -
Mal3g3223 949 SMART kh_6 686 751 IPR004087 GO:0003676
Mal3g3223 949 SUPERFAMILY Nucleic acid-binding proteins 762 842 IPR012340 -
Mal3g3223 949 MobiDBLite consensus disorder prediction 917 949 - -
Mal3g3223 949 CDD RNase_PH_PNPase_2 450 678 - -
Mal3g3223 949 SUPERFAMILY Ribonuclease PH domain 2-like 578 680 IPR036345 -
Mal3g3223 949 Pfam S1 RNA binding domain 762 837 IPR003029 GO:0003676
Mal3g3223 949 SUPERFAMILY Ribosomal protein S5 domain 2-like 424 596 IPR020568 -
Mal3g3223 949 Hamap Polyribonucleotide nucleotidyltransferase [pnp]. 81 840 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mal3g3223 949 ProSiteProfiles S1 domain profile. 757 837 IPR003029 GO:0003676
Mal3g3223 949 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 68 907 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mal3g3223 949 CDD PNPase_KH 687 747 - -
Mal3g3223 949 Pfam 3' exoribonuclease family, domain 2 226 288 IPR015847 -
Mal3g3223 949 Pfam 3' exoribonuclease family, domain 2 589 663 IPR015847 -
Mal3g3223 949 SUPERFAMILY Ribonuclease PH domain 2-like 225 309 IPR036345 -
Mal3g3223 949 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 683 751 IPR036612 GO:0003723
Mal3g3223 949 PANTHER POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, CHLOROPLASTIC 68 907 - -
Mal3g3223 949 TIGRFAM polynuc_phos: polyribonucleotide nucleotidyltransferase 417 838 IPR012162 GO:0003723|GO:0004654|GO:0006402
Mal3g3223 949 MobiDBLite consensus disorder prediction 914 949 - -
Mal3g3223 949 SMART S1_6 755 837 IPR022967 -
Mal3g3223 949 ProSiteProfiles Type-1 KH domain profile. 687 747 - -
Mal3g3223 949 MobiDBLite consensus disorder prediction 870 896 - -
Mal3g3223 949 Gene3D K Homology domain, type 1 684 756 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3223 Mal-Chr3 108099347 108119739 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3223 K00962 - gmx:100785430 1348.18