Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3214 ATGGAAGACTTCAACCACCACCTCTCCGCCCTCTCCACCTCCCTCCAATCCATCCCCACCTCCGACTCCTTCCGCTTCCACTACAACCTCCCCGAATTCCGTCACCTCATCGACGAACTCACCCAAAAATCCCAATCCATGCTCAACCAAATCGGCTCCTCCGACCACATTTGGGGTCCTAACTCCTCCTTCCCCGCTGACATCGACGACGCTTACGAATGGATCGTTAATGCAAACGACGACGTTCTGGAACTCGTCGACGAATTAGTCGACGAGTTTCATAGGGTTTTGATGGAGCAAGATATGGAAGAAGGGGAAGATGGGTTTTTCAAGATTAAGAAGGAGAGGAAAGGGTTGATTCTTTGGGGTGATGATCATGGGAGTGAAACGAAGAAGAAAGTGTCGTTTCATGTGCATACTCTTAGGAAGCCTCAGTATCATTATAATCTTGTGGTTGATAATTCTAATCAGCCTTTTGAACATGTTTGGTTGGAGAAGGAGAAGACTGAAGATGGTGAAAGGTTTATACATCCTTTGGAGAATTACTCCATTTTAGATTTTCTTGATAAAGATTATTTTGAGAGTCTTGCACCAGTAAAGCCTCCCCCACTGGAATGCACACCTTTCAAGCTTGTGGAGGATGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTTAGCTCAGTTGATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTTCAAGGATTGACTTGCTTGATGCAAATATCAACCCGGACGGAGGATTTTATTGTCGATACTCTGAAGCTCCGTGATCATGTTGGGGCACACCTGCGGGAATTTTTCATGGACCCTACCAAGAAAAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGACACTGGCCAGGCTTCGAGAGTGTTAAAAATGGAGAGATATAGTTTGCAACATCTTTTGCAACACTTTTGTGGGGTTACTGCAAACAAAGAGTACCAGAATGCAGACTGGAGAGCACGCCCTCTTCCTGATGTGATGATAAAATATGGAAGAGAAGATACACACTATCTGCTTTATATATTTGATTTAATGAGGGTCAAGCTATTTGAACTGTCTAAGGATTCTGAAAGTCCCGATGATCCTCTGTTGGAGGTATACAAGCGGAGTTATAATGTCTGCATGCAGCTGTACGAGAAAGAGCTTTTGACAGAAGACTCCTACCTTAAAATAAAGGGGCTACGAGGGGCTGGTTTTAACGGTCAGCAGCTTGCAGTTGTTTCCGGGCTCTATGAATGGCGTGATGTTCTTGCTCGGGCAGAGGATGAAAGTACTGGGTATATATTGCCAAACAAAGTTATTCTTGAAATTGCTAAGCATATGCCCGTCACTGCAAGCAATCTACGGCGATTGATAGCGCAGAGGTCAAGGCTACCATATGTTGAGCGCAATCATGATATCGTTGTTAACATTGTCAGACATTCTATGGAAAAGGCTGCTGCCTTTGAAGAAGCTGCACTTCGTTTGAAAGAAGAACATGCTGCCTTTGTAGAAGCTGCACTTCGTTTGAAAGAAGAACATGCAGCGAGTGTGTCAAATGTAGCATCTGTTATGGATGGAACTGAAGCTCCCCAATCTCATTCCTCGAACTTAAAGGATGAATGTGCATCAAATGGAAGCATTGCAATTGAAAATGCCACCTGTGTTAATATCTCTGAGAAGTCCTTGAAGGAAAATGGAGCAAATGTTCAGGTGCTAAAAATGCCTACTGGTGCTTGCGATGCAATGCTGCTGGGCAATTCAGCTTCAGAAAGGAATGGTTATCCTGACAAAAAGGGAAAGAAAAAGATCAAGGTAGAACAGAATGTATCATCGTTGGGCAATAATGAGAAGTCAAAAGTAGCTGTAAGTGTAGCTTCAGCAACATCAGATCTGCAAAAACCTCTTTCAGCTTCAGTTTCCACATGTACCCTGGATACAAACATAACGGTAGACTTAGATTCAGACTCGGAGGATATGATGTAG 2049 0.4363 MEDFNHHLSALSTSLQSIPTSDSFRFHYNLPEFRHLIDELTQKSQSMLNQIGSSDHIWGPNSSFPADIDDAYEWIVNANDDVLELVDELVDEFHRVLMEQDMEEGEDGFFKIKKERKGLILWGDDHGSETKKKVSFHVHTLRKPQYHYNLVVDNSNQPFEHVWLEKEKTEDGERFIHPLENYSILDFLDKDYFESLAPVKPPPLECTPFKLVEDVKGLKELAAKLSSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGAHLREFFMDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKMERYSLQHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIFDLMRVKLFELSKDSESPDDPLLEVYKRSYNVCMQLYEKELLTEDSYLKIKGLRGAGFNGQQLAVVSGLYEWRDVLARAEDESTGYILPNKVILEIAKHMPVTASNLRRLIAQRSRLPYVERNHDIVVNIVRHSMEKAAAFEEAALRLKEEHAAFVEAALRLKEEHAASVSNVASVMDGTEAPQSHSSNLKDECASNGSIAIENATCVNISEKSLKENGANVQVLKMPTGACDAMLLGNSASERNGYPDKKGKKKIKVEQNVSSLGNNEKSKVAVSVASATSDLQKPLSASVSTCTLDTNITVDLDSDSEDMM* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3214 682 Pfam 3'-5' exonuclease 211 376 IPR002562 GO:0003676|GO:0006139|GO:0008408
Mal3g3214 682 Gene3D - 132 416 IPR036397 GO:0003676
Mal3g3214 682 PANTHER 3'-5' EXONUCLEASE 522 655 - -
Mal3g3214 682 Gene3D HRDC domain 417 512 IPR044876 -
Mal3g3214 682 SUPERFAMILY HRDC-like 413 505 IPR010997 GO:0000166|GO:0044237
Mal3g3214 682 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 1 525 IPR045092 GO:0000175|GO:0000467
Mal3g3214 682 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 522 655 IPR045092 GO:0000175|GO:0000467
Mal3g3214 682 Pfam HRDC domain 431 479 IPR002121 GO:0003676
Mal3g3214 682 SMART 35exoneu6 209 378 IPR002562 GO:0003676|GO:0006139|GO:0008408
Mal3g3214 682 CDD Rrp6p_like_exo 205 397 - -
Mal3g3214 682 SMART hrdc7 428 509 IPR002121 GO:0003676
Mal3g3214 682 SUPERFAMILY Ribonuclease H-like 142 411 IPR012337 -
Mal3g3214 682 Pfam PMC2NT (NUC016) domain 16 94 IPR012588 GO:0000176|GO:0006396
Mal3g3214 682 ProSiteProfiles HRDC domain profile. 428 510 IPR002121 GO:0003676
Mal3g3214 682 PANTHER 3'-5' EXONUCLEASE 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3214 Mal-Chr3 107941392 107949439 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3214 K12591 - gmx:100804872 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g3214 3 107941392 107949439 Mal3g3214 3 107941392 107949439 ECH