Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3159 ATGGCTGCAAATCCTTGTATTCAATTTGGATTTCAAGGTACCACAGAGCCAAATCCTTGTGCTGTGGAATCACCGGCTACGCTTTTAATCAAACACCTTCCAGACGCTATTCCTAATGACACCCTTTCTCGTCTCTTGTCGCATTACGGTGCTTCTGCCGTTCGCCCTTGCTCTGGTGGAAGGTTGAGAAATTGTGCTTTTGTGGATTTCAAAAATGATATGCTGGCATCTCAAGCACAACGTCAACTAAATGGGTTGAAATTTCTTGGTAAAGTCTTGTCAGCAGAGAGAGCTAGTAAGCCAAATGAGAGTGGGGGAAAAAGCAGTGGAGCTCAGCTGGGAAACGACTCTAAAACATCAGCAGTGAAGAGTGAAGATGTAACCAAACCTATTGATGGAGAAGCAAAATCAGGAGGCTTCCCTATTCCCGAGCCAATTGCCCACAGACTTGGGGTTGATTATCCATTTCCTCCTCATCTTGAGTATGCTTATCCTCCACCGGATGGAAATATACTGACTAACATCGTGAATGCTCTAATTGCCGTTCCTCGCTTTTACACTCAGGTTCTACACTTGATGAACAAAATGAACATTCCAGCTCCCTTTCGTATGGCACTACCCATGCCACCATTACCTCCAGAGGTGCCAGCCCCACCCCCACCCGTGCCTCCTCCTAATTCTGTAACTGCAATGCTTCGCTCTGCAAATATGTCAAGTGATGAATCAGAAATGGAATCTTCAGATGAGGAGGGTGGAGCAAGAACAGGAAATTATGGACGAAAGCGTGCCAGGCGTGGGGCCATTGTTGGCCCTGCTATTGATAAAGATGTGGCTCATGAGTCTGTTGGAGTAAAACCTGCCACCTTGATCCCAAAAGAAATCCCAATGATAAAAAAGAACCCCGTCTTAAAGATCAATATTGCTCCCAAAGCAACCGTGAATGAACATAAGGATAATGGCTCTGGACAAGAGTTACAAGAGCCAGAAAAAGATACTCTAGATCCCAACAAATTTTTGACTCCTGATGAACTAGAGAAAGGAAAGTTACCTCCGGAGGAGATCTTATCTCTTCCAATGTTTAAGAACTATACAGCGGGAAATCCTGCTTCTGTGTTGTATATTAAGAATTTGGCAAAAGATGTGATTGCTGATGATTTCTATCTTTTATTTGGGTCCTTCTTTGGAAGTACTGATGCTGCTAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGAAGGATGAGGGGTCAAGCTTTTTTAACATTCCCCTCCGCAGAACTGGCTCATCAAGCTCTGAATCTAGTGAATGGATATGTATTCAAAGGCAAGCCAATGATAATTCAATTTGGCCGGAATCCTGGTGCTGCCAAGGCAACTTAA 1380 0.4413 MAANPCIQFGFQGTTEPNPCAVESPATLLIKHLPDAIPNDTLSRLLSHYGASAVRPCSGGRLRNCAFVDFKNDMLASQAQRQLNGLKFLGKVLSAERASKPNESGGKSSGAQLGNDSKTSAVKSEDVTKPIDGEAKSGGFPIPEPIAHRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPMPPLPPEVPAPPPPVPPPNSVTAMLRSANMSSDESEMESSDEEGGARTGNYGRKRARRGAIVGPAIDKDVAHESVGVKPATLIPKEIPMIKKNPVLKINIAPKATVNEHKDNGSGQELQEPEKDTLDPNKFLTPDELEKGKLPPEEILSLPMFKNYTAGNPASVLYIKNLAKDVIADDFYLLFGSFFGSTDAAKSGLQVKLMQEGRMRGQAFLTFPSAELAHQALNLVNGYVFKGKPMIIQFGRNPGAAKAT* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3159 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 444 IPR000504 GO:0003723
Mal3g3159 459 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 93 IPR000504 GO:0003723
Mal3g3159 459 SUPERFAMILY RNA-binding domain, RBD 25 453 IPR035979 GO:0003676
Mal3g3159 459 MobiDBLite consensus disorder prediction 313 344 - -
Mal3g3159 459 MobiDBLite consensus disorder prediction 235 259 - -
Mal3g3159 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 370 452 IPR000504 GO:0003723
Mal3g3159 459 Gene3D - 364 459 IPR012677 -
Mal3g3159 459 PANTHER RNA-BINDING REGION-CONTAINING PROTEIN 3 19 458 - -
Mal3g3159 459 MobiDBLite consensus disorder prediction 101 121 - -
Mal3g3159 459 MobiDBLite consensus disorder prediction 320 344 - -
Mal3g3159 459 CDD RRM1_RBM40_like 27 98 IPR034147 GO:0005515
Mal3g3159 459 MobiDBLite consensus disorder prediction 97 142 - -
Mal3g3159 459 SMART rrm1_1 371 448 IPR000504 GO:0003723
Mal3g3159 459 SMART rrm1_1 27 96 IPR000504 GO:0003723
Mal3g3159 459 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 100 IPR000504 GO:0003723
Mal3g3159 459 Gene3D - 12 116 IPR012677 -
Mal3g3159 459 CDD RRM2_RBM40_like 370 450 - -
Mal3g3159 459 PANTHER UNCHARACTERIZED 19 458 IPR045164 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3159 K13157 - gmx:100818499 662.144