Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g3153 ATGATCAGAATCAGATCTAAACTATCTGTATTCTCTCTTGTTCTATTACGCATAAGGCAAAACCCAATCACTGATAATCACTTTCACACACTTCAGAACCCTCTTATCAATGTTTTTAACTCTTCAAATTATTACTCTTTTTTAGCTCCACCAAAATTTGGTTTCTTAGTTAGTCCCTTTTGTACTGATTCTTCAACCAAAAGCCCTGCATTAGGATTGGATGAGGCATTGAGCGATGATGACGATAATGATGATGACGACGACGATGATCATGAAAAGAATAGTACTCAGTTACATTTAAGGGATGATGGTTTTGTCAAAGATGTTAAGACCATTTTGGATATAATTCACGAACCGGGTTCGGGACCATATGAAATTAAGCAGAAGCTTGAAGATTGCAGTGTTAAAGCATCATCAGAGTTGGTTGTGGAGGTTCTTTCGAGAGTTCGCAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCTGGAAAGCAACCAGGGTATGATCATTCGGTTCGCGAATACCATTCAATGATATCTGTTCTTGGTAAAATGAAGAGGTTTGATACTGCTTGGGCCTTAGTTGAAGAAATGAGAAGAGGAAAAACTGGTGAATCTATTGTTACCCCACAAACTCTCTTGATTATGATAAGGAAATATTGTGCTGTTCATGATGTCGGTAGGGCTATAAACACTTTCTATGCTTTTAAACGGTTTAACTTTAAAGTTGGATTGTATGAATTTCAAGGTCTTCTTTCTGCGCTTTGTCGGTACAAGAATGTACAGGATGCTGAGCATTTACTGTTCTGCAACAAAGATGTTTTCCCACTTGACACCAAAAGTTTTAACATCATTCTTAATGGATGGTGCAATTTGATCGTTAGCGCGCGCAATGCAGAAAGGATTTGGGAGGAGATGAGTAAGAGACGAATCCAACACGATGTTGTTTCCTATGCTAGTATCATATCTTGCTATTCGAAGTCTTCTAAACTTTATAGGGTGCTCCAGATGTTTGAGCAAATGAAGAAAAGGAATATCACTCCTGATAGGAAGGTTTATAACGCAGTCGTTTTTTCTCTTGCGAAGAATAGGATGGTGAAAGAAGCTGTAAATCTTATTAGAACAATGGAAGATAACAATGTTACTCCGGATGCTATTACTTACAACTCCCTGATCAAGCCTCTCTGCAAAGCCCGTAAAATTGATGAAGCTAAAGAAATTTTCGATGAGATGTTAAAGCGACGCATATCCCCGTCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTGAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGAGCTAGGGTGCAACCCAACTATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGGTGGCGTCAGCTTGATGAAGTCAATAGGATATGGAATGCTTTGAGGGAAGATGGAATCGGCCATGATCGTAGCTCGTATATTGTACTGATTCATGGTCTATTTCTCAATTGTAAGGTGGAGGAAGCATACAAATATTATATAGAGATGCAAGAGAAAGGTTTTCTCCCTGAACCAAAGACAGAAAATATGCTTCAGGCATGGCTTTCTGGGAGACAAGTAACGGAGGGCCAGGTAACAGATTTAGAGCACAATCAATTGGAACATGGTAGTCTTAAAAAGAATGTCAAACCTATACAAAGTAAATTTGATAGGGAAAAGGATTTTCTTCGCGAACCTGAGACCAGAAGTGTAACAAGAGAAGGAGGCTTTTCTTTCTGGGAGAAGTAA 1782 0.385 MIRIRSKLSVFSLVLLRIRQNPITDNHFHTLQNPLINVFNSSNYYSFLAPPKFGFLVSPFCTDSSTKSPALGLDEALSDDDDNDDDDDDDHEKNSTQLHLRDDGFVKDVKTILDIIHEPGSGPYEIKQKLEDCSVKASSELVVEVLSRVRNDWEAAFTFFLWAGKQPGYDHSVREYHSMISVLGKMKRFDTAWALVEEMRRGKTGESIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFKVGLYEFQGLLSALCRYKNVQDAEHLLFCNKDVFPLDTKSFNIILNGWCNLIVSARNAERIWEEMSKRRIQHDVVSYASIISCYSKSSKLYRVLQMFEQMKKRNITPDRKVYNAVVFSLAKNRMVKEAVNLIRTMEDNNVTPDAITYNSLIKPLCKARKIDEAKEIFDEMLKRRISPSIRTFHAFFRILRVKEEVFELLDKMKELGCNPTIETYIMLIRKFCRWRQLDEVNRIWNALREDGIGHDRSSYIVLIHGLFLNCKVEEAYKYYIEMQEKGFLPEPKTENMLQAWLSGRQVTEGQVTDLEHNQLEHGSLKKNVKPIQSKFDREKDFLREPETRSVTREGGFSFWEK* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g3153 593 Pfam Pentatricopeptide repeat domain 302 357 IPR002885 -
Mal3g3153 593 Pfam Pentatricopeptide repeat domain 434 461 IPR002885 -
Mal3g3153 593 PANTHER OS01G0816000 PROTEIN 48 583 - -
Mal3g3153 593 Pfam PPR repeat family 384 428 IPR002885 -
Mal3g3153 593 MobiDBLite consensus disorder prediction 75 91 - -
Mal3g3153 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 487 521 IPR002885 -
Mal3g3153 593 Gene3D Tetratricopeptide repeat domain 295 399 IPR011990 GO:0005515
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 353 386 IPR002885 -
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 387 420 IPR002885 -
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 317 350 IPR002885 -
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 490 521 IPR002885 -
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 176 201 IPR002885 -
Mal3g3153 593 TIGRFAM PPR: pentatricopeptide repeat domain 455 484 IPR002885 -
Mal3g3153 593 Gene3D Tetratricopeptide repeat domain 124 273 IPR011990 GO:0005515
Mal3g3153 593 Gene3D Tetratricopeptide repeat domain 400 576 IPR011990 GO:0005515
Mal3g3153 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Mal3g3153 593 Pfam PPR repeat 176 201 IPR002885 -
Mal3g3153 593 Pfam PPR repeat 490 519 IPR002885 -
Mal3g3153 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Mal3g3153 593 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 583 - -
Mal3g3153 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Mal3g3153 593 MobiDBLite consensus disorder prediction 72 97 - -
Mal3g3153 593 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 452 486 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g3153 Mal-Chr3 107029132 107030913 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g3153 100 562 Glycosyltransferase AT1G05670 20.594 1.32e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g3153 - - gmx:100785546 885.945